Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1879 ATGTCTGCAACGTTGACTCAGACCTTGCACTGCTTGCACCATTCAGATGAAGGTGACAACTACACCTATGGCAACAGCACAAGCGTGAGTGAGATAGAGGAAGAGAACACCTCGCACGTGCACTTCAATCATGCTCCCAATCCTATGCTCACCATTAACGAAGAAGATACTGTTTATGTAGCCGTTGGTAAGGGCCAAAGTAGCATGGTAGCTCTCTCATGGACCCTCAACAACTTGCCTTCTCCATCTACCATGCTCTATCTCGTACATGTTTTCCCAGAGATCAACCACGTTCCAAACCCATTGGGAGTGGGAATGATTCCAAAGGAGCAAGTGAGTCCTGAGCAGGTGGAGAGCTATGTCGCCCAAGAAAGAGGCAAGAGGAGAGACCTCCTTAATAAGTTCCTCCAGTTATGCTCTGCTTCCAAGGTAAAAGTAGACACCATCCTGATAGAGAGTGACTTGATTGCAAAGGCTATCATTGACCTGATTCCCATTCTTCAAATAGGAAAACTAGTGATTGGAGCCAATAAATCCCAATTAAGAAAATTGAGATCAAGGAAAGGGAATGGCATAGCTGATCAGATACTTCAGAATGCTCCAGAAAGTTGCAAGGTGAGTATTTTATGTGAAGGGAAGGAAGTAAGAGAACAGATAACTAGAGCCACTGCTAATGATACTTCCATGGCCCTGAAAAAAGATCAGCAAAATGCTTCAGTTTCATGTGTTTGTTTTAACTTCTAA 744 0.4382 MSATLTQTLHCLHHSDEGDNYTYGNSTSVSEIEEENTSHVHFNHAPNPMLTINEEDTVYVAVGKGQSSMVALSWTLNNLPSPSTMLYLVHVFPEINHVPNPLGVGMIPKEQVSPEQVESYVAQERGKRRDLLNKFLQLCSASKVKVDTILIESDLIAKAIIDLIPILQIGKLVIGANKSQLRKLRSRKGNGIADQILQNAPESCKVSILCEGKEVREQITRATANDTSMALKKDQQNASVSCVCFNF* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1879 247 Gene3D HUPs 45 220 IPR014729 -
Apr1g1879 247 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 12 246 - -
Apr1g1879 247 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 12 246 - -
Apr1g1879 247 CDD STK_N 57 212 - -
Apr1g1879 247 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 57 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1879 Apr-Chr1 28395909 28398142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1879 61 228 Plant U-box Gene Family AT5G57035 30.952 9.26e-17 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1879 - - aprc:113852731 492.271