Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1868 ATGGACCTCTTCGCCGCCGACCACTTCCCCGTCCCCGACCACGTCACTCCTTTTCCCGATTCCGGCGACCTCCTTTACACCACCGACCTCCTCTCTCACCGCCACAACCCCCAGAAGCTCCGCCCAATCAGGTCCATCCCCTCCCCTCTCAATGCCCACCCTTCTCTACCCACCCGAAGGCAAGATCCCATCCCTCCCGGGTCGGGTCATGCCCCGCTTCCATCCGGCTCCTCTTTTGAGGGTGAGGATGAAGATGATGATTCATCAGCAAGTACTAAAGAACTTGGGTCTAGAAAGAGAAGGAGAAAGACAGTGAGAAAGCTTGAAGATTTCGTGAAGGATTTGGTGACGAAGGTGATGGAGAAGCAAGAGCAGATGCACAAGCAGTTAGTGGAAATGATAGAAAACAAGGAAAGGGAAAGAATAAAGAGAGAAGAAGCTTGGAAGCATGAGGAGATGGAAAGAATTAGAAAAGATGAAGAAGCTAGAGCCCAAGAAAAGACTCGCAATTTAGCCCTCATATCCTTCATTCAGAACCTCTTGGGCCATGAAATTCAAATCCCAGAACATGTAGAAGCATGCAGCAAAAGAGAAGAGGATGAGGTTCAGGTGAATGTTGGAAAAGATTTAAACAGTGATGCAAGTAGCAACAGATGGCCAGATGTTGAAGTACAAGCACTCATAACTGTGAGAACTTCATTGGAACACAAGTTTCGTGTCATGGGATCAAAAGGGTCAATATGGGAGGAGATACGTGAAGCAATGCATGGCATGGGTTACAACCGCTCTGCAAAGAAGTGTAAGGAGAAGTGGGAGAACATCAACAAGTACTACAGAAGGACGATAGGGAGTGGCAAGAAAAGGCGTCAAAATAGTAAAACTTGTCCTTACTTTGATGAGTTGGACATTCTGTATAGAAATGGGCTTCTCAATCTTGGAAATGCCCTGAGCAATACCAATGATGTTCCCAAGATTGAGGAGAAGGAGTAG 990 0.4707 MDLFAADHFPVPDHVTPFPDSGDLLYTTDLLSHRHNPQKLRPIRSIPSPLNAHPSLPTRRQDPIPPGSGHAPLPSGSSFEGEDEDDDSSASTKELGSRKRRRKTVRKLEDFVKDLVTKVMEKQEQMHKQLVEMIENKERERIKREEAWKHEEMERIRKDEEARAQEKTRNLALISFIQNLLGHEIQIPEHVEACSKREEDEVQVNVGKDLNSDASSNRWPDVEVQALITVRTSLEHKFRVMGSKGSIWEEIREAMHGMGYNRSAKKCKEKWENINKYYRRTIGSGKKRRQNSKTCPYFDELDILYRNGLLNLGNALSNTNDVPKIEEKE* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1868 329 CDD GT1 217 281 - -
Apr1g1868 329 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 76 326 - -
Apr1g1868 329 Pfam Myb/SANT-like DNA-binding domain 217 302 IPR044822 -
Apr1g1868 329 Coils Coil 150 170 - -
Apr1g1868 329 MobiDBLite consensus disorder prediction 1 20 - -
Apr1g1868 329 PANTHER - 76 326 - -
Apr1g1868 329 Coils Coil 120 140 - -
Apr1g1868 329 ProSiteProfiles Myb-like domain profile. 211 275 IPR001005 -
Apr1g1868 329 MobiDBLite consensus disorder prediction 36 103 - -
Apr1g1868 329 Gene3D - 219 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1868 Apr-Chr1 28291551 28295185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1868 99 307 Trihelix Transcription Factor Family AT5G47660 45.536 5.69e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Apr1g1868 Myb_DNA-bind_4 6.7e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1868 - - pvu:PHAVU_006G139200g 508.834