Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1866 ATGGCTGAGTCTGACAACGAGTCAGGAGGTCAAACGGGTAACGCAAGTGGAAACAGTGAGTTTTCTGGGTGTAGAGAGCAAGATAGGTTTCTTCCAATAGCGAACGTGAGTAGGATCATGAAGAAAGCGTTACCGGCGAACGCGAAGATCTCAAAGGAAGCGAAGGAAACGGTGCAAGAGTGTGTATCAGAGTTCATAAGCTTCATCACAGGGGAAGCATCGGATAAGTGCCAGAAAGAGAAGAGAAAGACGATCAACGGTGATGATTTGTTGTGGGCCATGACCACGTTAGGATTTGAAGAGTATGTGGAGCCTCTAAAGATTTATCTGCACAAGTACAGAGAGATGGAAGGGGAGAAAACTGCTATGATGGGAAGGCCACCAGGGGATCAAAGAGATGGGAATAATGTTGGTGAGGGTTATGGTCATGCTCATGCTCATGCCCATGGGAGTGTGGTGCCATCTCCTATGATGATGATGATGGGGCATCAGCATCCGCATCAGCATCAGCATCAGCATCAGCATCAGCATCAGCATCCGCATCAAGGACACGTGTATGGTGGATCTGGGACTGGATCTCCTTCTTCTGCAAGAACTAGATAG 603 0.4809 MAESDNESGGQTGNASGNSEFSGCREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKIYLHKYREMEGEKTAMMGRPPGDQRDGNNVGEGYGHAHAHAHGSVVPSPMMMMMGHQHPHQHQHQHQHQHQHPHQGHVYGGSGTGSPSSARTR* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1866 200 SUPERFAMILY Histone-fold 27 136 IPR009072 GO:0046982
Apr1g1866 200 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Apr1g1866 200 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 177 - -
Apr1g1866 200 Gene3D Histone, subunit A 19 183 IPR009072 GO:0046982
Apr1g1866 200 MobiDBLite consensus disorder prediction 166 180 - -
Apr1g1866 200 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Apr1g1866 200 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Apr1g1866 200 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Apr1g1866 200 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 177 IPR027113 GO:0001228|GO:0006355|GO:0016602
Apr1g1866 200 MobiDBLite consensus disorder prediction 121 200 - -
Apr1g1866 200 MobiDBLite consensus disorder prediction 1 23 - -
Apr1g1866 200 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1866 Apr-Chr1 28280309 28281635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1866 1 167 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.639 2.01e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Apr1g1866 CBFD_NFYB_HMF 1.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1866 K08065 - gmx:100305641 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2030 9 28690566 28690952 Apr1g1866 1 28280309 28281635 PCT