Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1856 ATGACATCCATACCTTCGAAAAACCTATGGATTCGGAGGCAACAATGCCCTTGTGGAGATTGGAAGTGTTATATTACATATGAGGGTGATGCTGAGGAGGGTTCTACACCACCAGAATTGGTGAAGGCAGAGAAAGCATCATCTGCAGCTATGATTACTCCCTATGTTGGGATGGTGTTTAAGAGTGATGATGATGCTTTTGAGTATTATGGCAATTTTGCTAGGAAGAATGGGTTCTCTATTAGGAAAGAAAGATCTAGAATTAGCCCTCAATTGGGTATTTACAAGCGTGATTTTGTTTGTTACCGATCTGGTTTTGCCCCGGTGAAGAAGAAGCCTAATGGTGAACACCATAGAGATAGGAAGTCCGTGAGGTGTGGATGTGATGCAAAAATGTATCTGTCCAAGGAGGTTGTAGAAGGGGTTTCTCAATGGTTTGTTGTGCAGTTTAGTAATGTGCACAATCATGAACTCTTGGAAGATGATCAAGTGCGCCTTCTGCCTGCGTACCGTAAAATTCATGAGGCCGATCAAGAGCGTATACTCCTGCTTTCCAAAGCCGGGTTTCCAATACATCGGATAGTGAAAATGCTTGAGTTGGAAAAGGGCATCCAAGGGGGGCAACTTCCTTTCTTGGAAAGGGACGTGAGGAACTTTGTTCAAAATCGCAAGAAGGTTGTTCAAGAGAATGAGGCATTGCTCAGTGAGAAAAGAGAAAATGATATATTGGAACTTCTTGAGGCATGCAAAGATAGCTATGGTAGAACCATTTTTTTTGGTTGTGTTTTATTGCAGGATGAAACACCGCAATCCTTCTCATGGGCATTACAGACTTTTGTCCGGTTCATGAGAGGAAGATGTCCACAAACTATACTAACTGATCTAGAGCCAGGGCTCAGAGATGCCATTAGAAGTGAATTTCCTGGAACTAAACATGTCATTCCTCAGTGGAATATTCTATACAAGTTACCCAGTTGGTTTTCTCTTCGTCTTGGGTCTCGCTATGCAGAATTTAAATCCGAGTTTGATGCCTTATTTCACATTGAGAGTACAGAGGATTTTGAACTTCAGTGGAGCCAAATGATTTCTGTTTTTGAACTTGGTTCAGATAAACATACTGATTTATTGTTTTCTGTTCGAGCATCCTGGGCACAATCCTATGTAAGAGGTTACTTTTTGGCTCAAATGGTGACAATAGCTTATTCAAAGTCCATAGATGCTTTTTTGAAAGGGATTTTCACTACACACACATGTTTGCCATTGTTGCTCAGTTGTTGTTCTAATGATTTTCTTCCCTCATGTATATTGAAGGTTGGCATTTCTGCAAGTTTTCAGCGTCAAGCACATCAGGAGACTCAATATATTCATCTCAAAACTTGCATACCTATTGAAGAGCACGCACGGAGTATTCTCACACCTTTTGCTTTCAATGCTTTGCAGCAAGAGCTATTACTGGCAATGCAATATGCTACATCTGAAATGGCCAATGGATCATATATTGTGCGGCATTTCAAGAGGATGGATGGAGGACGACTTGTGATATGGTTGGCAGAAGACGAACAGATACACTGCTCTTGCAAGGAATTTGAATCCTCAGGAATACTATGCAGACACGCTCTTCGTGTATTCGTGATAAAGAACTACTTTCAGCTGCCTGACAAATACTTTTTAAGTAGGTGGAGACGCGAATGCTCCTTGCTTATTGATGATGATCATAATAATCAAGGTATTGGTGGGGATTGGTTTCAAGAATATCAGTCCCTAGCAGAAACTTTATTTTCAGAATCATCAATTACAAAAGAGCGATCTGACTACGCCCGTAAAGAACTGACAAAAGAACTAACTAGGATTCTTAATGAGGTTAGAAATATGCCTGAGACTGATGCAGTCTGCATGACCATGACTGTTTCACCAGCCAGCTAG 1923 0.4103 MTSIPSKNLWIRRQQCPCGDWKCYITYEGDAEEGSTPPELVKAEKASSAAMITPYVGMVFKSDDDAFEYYGNFARKNGFSIRKERSRISPQLGIYKRDFVCYRSGFAPVKKKPNGEHHRDRKSVRCGCDAKMYLSKEVVEGVSQWFVVQFSNVHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLELEKGIQGGQLPFLERDVRNFVQNRKKVVQENEALLSEKRENDILELLEACKDSYGRTIFFGCVLLQDETPQSFSWALQTFVRFMRGRCPQTILTDLEPGLRDAIRSEFPGTKHVIPQWNILYKLPSWFSLRLGSRYAEFKSEFDALFHIESTEDFELQWSQMISVFELGSDKHTDLLFSVRASWAQSYVRGYFLAQMVTIAYSKSIDAFLKGIFTTHTCLPLLLSCCSNDFLPSCILKVGISASFQRQAHQETQYIHLKTCIPIEEHARSILTPFAFNALQQELLLAMQYATSEMANGSYIVRHFKRMDGGRLVIWLAEDEQIHCSCKEFESSGILCRHALRVFVIKNYFQLPDKYFLSRWRRECSLLIDDDHNNQGIGGDWFQEYQSLAETLFSESSITKERSDYARKELTKELTRILNEVRNMPETDAVCMTMTVSPAS* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1856 640 Pfam SWIM zinc finger 519 543 IPR007527 GO:0008270
Apr1g1856 640 SMART 26again6 522 549 IPR006564 GO:0008270
Apr1g1856 640 Pfam MULE transposase domain 248 319 IPR018289 -
Apr1g1856 640 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 27 251 IPR031052 GO:0006355
Apr1g1856 640 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 252 629 IPR031052 GO:0006355
Apr1g1856 640 Pfam FAR1 DNA-binding domain 68 159 IPR004330 -
Apr1g1856 640 PANTHER FAR1-RELATED SEQUENCE 10 ISOFORM 1 27 251 - -
Apr1g1856 640 PANTHER FAR1-RELATED SEQUENCE 10 ISOFORM 1 252 629 - -
Apr1g1856 640 ProSiteProfiles Zinc finger SWIM-type profile. 512 547 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1856 Apr-Chr1 28211044 28213857 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Apr1g1856 FAR1 1.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1856 - - egt:105969060 838.565