Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1853 ATGTCTGGTGGAGAAGTTGGTCCTGTTTTTGTAGCGTGGGAGGAGAAAGTGATATGCCAGGAGCGTGGGAACCGAGTGATTCATTTCTATTTGAAGGATGCATTGGGGAATTCAGTGCTTGCTGTTGTGGGGACTGAGAGGAGTGTGAGGCACATGATGTATGTTGTCCCTGATAATTTCTTGCAGGCTTATGGATCCACACAATCCATCAATGCTTGTAAATGGAGGGCAAGGAGAGAGGTTGTTGACTGGCTCACTTGTTTGGTCTCGCGAAATCGTCAACAACATCATGCAGGTGTGCCGCTGGATGATTCAGCACTAGCAATGGAATCTCTCAAGATTTCAACAGCTGGAATCAATGCCAATAAAGAAATTTTGCCTGATAAAATGATTTCTAGGAAACTGAAGTTTCATAGTTCAGATATTGAATGGTCAGGGGTTGCTTGGTTTTGTGCTAAACAGCTGAAGCACTACCCAGGCTTTTGCAGGAATGGGACAACCATATATGTTCATTCATTTGTATATATTATGGCTGAAGAAGAAAACCACTACCTTGGTTACCTGGAAGATATGTATGAAGATAAGAAGAAACAAAAAAAGGTGAAGGTACGGTGGTTTCATCATGGTCAGGAAGTTAAGCACGTGATTCCTCAACTGAATCTGCAAGAGGGAGAGGTTTTCATCACACCTCATGTTCAGGTGATCAGTGCTGAGTGTGTCAATGGTCCTGCAACAGTTTTGACTCCAAAGCATTATGAGAAGTATCTGGCTGCTGTGCCCCATACCTCTTTATCTGAGATCCATACATGCTTCAGGCAGTTTAAAAACAATAAGCTTAAGCCCTTCACACTTACTAAGTTGCGTGGATATGGTAACCAATCTATACTTTCTTGTTTGAATAGTCCTATTCTCTCAAAGAGAAAGGCGAAGTGTCAAAAGTTGCACACAGAAGATGATGAGAACTGCACTCAAGATGGTCCTTTGAGGTCCAGCAATAAGAGAAACAGAAGCTCTAAGGGGTGTCAAGTACTTGAAAAGGATGCTTCTGTTCAGCAAATCTCTGTTCCTATAAATGAAATGGCAAAATGTGAACCAAAATACCCAAGTTTAAAATTGAAACTATCAAGAAAAACAATGGGTATTACGGTTATTGGACCAAAAGCTCAACTGTCTTTTAGAGTCGATGAAAAGGTTGAGGTTCTCTGTCAAGATAGTGGAATTAGGGGATGCTGGTTTAGCTGTAAAATCTTAAGTACATCTCAGAAGCATCTGAAGGTCCAGTATGATGATTTGCTGGATGTAGATGGACCAGAGAAACTAGAGGAATGGGTCCCTGCATCTAGAGTGGCAGCTCCTGACAAACTGGGTATGCGATGTTCAGGCCGCTTGACAGTACGACCATGCCCTCCTAAATATACTACAGATCACACTCTTGAGATTGGCACACCAGTGGATGCCTGGTGGAGTGATGGATGGTGGGAAGGTGTCGTAACTGCAGTCAGTGTTTGTCGAGTTGAAATCCTGCAGGTTTATTCCCCTGGTGAAGATAAGTTCCTAATGGTTGAGAAGAAGAACATTCGGATTTCCCGAGATTGGATTGATAACAGGTGGGTTGATATACCAAGAAAGCCTAACATTTGCAGCTATTTATCTTCGAAGGTCAGCTCCAGCATCAGGCTGTCTGCTAATTCTGCAGTGGTAGATGGATCTGTGTCTGATTGCTCTGCAATATTAGAAAGTAAATCATCATCAATTGCCAAAGTGGAAGTTGCTCCAAAGATTGAGCTAGAATTATCTGGTTTGGAAGCACCTGAAGACCCGATGAAGAGAACATATTTGGGGAAGCCACTCCATGCCATTCATGAAGACAAGGATAACAACTCTGATGGTGGCCTTGATGGTGAAGCTGACAATATTAATGAAGATAGAAAGCCACTTAGTGTCGTTGAGGAATACAAAGATAATAACTCTGGCAGTGGCAGTGAGGGTGACACTACTAACAATGATGATGACGCTGACAATGTGGAAGAGGACCTTGAGGAAAATTTTGATTGTTCTGAACCAAAACTTGATGCAGCAGAAGCAATACAGGTTACATGA 2100 0.4243 MSGGEVGPVFVAWEEKVICQERGNRVIHFYLKDALGNSVLAVVGTERSVRHMMYVVPDNFLQAYGSTQSINACKWRARREVVDWLTCLVSRNRQQHHAGVPLDDSALAMESLKISTAGINANKEILPDKMISRKLKFHSSDIEWSGVAWFCAKQLKHYPGFCRNGTTIYVHSFVYIMAEEENHYLGYLEDMYEDKKKQKKVKVRWFHHGQEVKHVIPQLNLQEGEVFITPHVQVISAECVNGPATVLTPKHYEKYLAAVPHTSLSEIHTCFRQFKNNKLKPFTLTKLRGYGNQSILSCLNSPILSKRKAKCQKLHTEDDENCTQDGPLRSSNKRNRSSKGCQVLEKDASVQQISVPINEMAKCEPKYPSLKLKLSRKTMGITVIGPKAQLSFRVDEKVEVLCQDSGIRGCWFSCKILSTSQKHLKVQYDDLLDVDGPEKLEEWVPASRVAAPDKLGMRCSGRLTVRPCPPKYTTDHTLEIGTPVDAWWSDGWWEGVVTAVSVCRVEILQVYSPGEDKFLMVEKKNIRISRDWIDNRWVDIPRKPNICSYLSSKVSSSIRLSANSAVVDGSVSDCSAILESKSSSIAKVEVAPKIELELSGLEAPEDPMKRTYLGKPLHAIHEDKDNNSDGGLDGEADNINEDRKPLSVVEEYKDNNSGSGSEGDTTNNDDDADNVEEDLEENFDCSEPKLDAAEAIQVT* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1853 699 MobiDBLite consensus disorder prediction 619 699 - -
Apr1g1853 699 ProSiteProfiles BAH domain profile. 166 285 IPR001025 GO:0003682
Apr1g1853 699 MobiDBLite consensus disorder prediction 619 650 - -
Apr1g1853 699 SMART BAH_4 166 285 IPR001025 GO:0003682
Apr1g1853 699 MobiDBLite consensus disorder prediction 666 684 - -
Apr1g1853 699 Pfam Agenet domain 396 470 IPR008395 -
Apr1g1853 699 Gene3D - 133 283 IPR043151 -
Apr1g1853 699 SMART agenet_At_2 390 455 IPR014002 -
Apr1g1853 699 SMART agenet_At_2 476 534 IPR014002 -
Apr1g1853 699 Pfam BAH domain 167 260 IPR001025 GO:0003682
Apr1g1853 699 MobiDBLite consensus disorder prediction 325 340 - -
Apr1g1853 699 MobiDBLite consensus disorder prediction 316 340 - -
Apr1g1853 699 PANTHER BROMO ADJACENT-LIKE DOMAIN PROTEIN 8 594 - -
Apr1g1853 699 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 8 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1853 Apr-Chr1 28189716 28196704 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1853 404 532 PHD Transcription Factor Family AT5G58610 29.323 2.01e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1853 - - gmx:100816046 1062.75