Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1852 ATGGGTCGTTCTCGTGGAAATTTTCACCACGCCGATGAGGATCCCAACCAAAGGTCAAGGAGAAAAAAGAATTCTGTCAGTGGAGAGAATTCAGAATCTGGAGCAGCAGCAGGCCAAGGAACAAGTGAAGGCAAAAGGGCTTTGTATCACTGCAATTATTGTAATAAAGATATAACAGGAAAAATCCGTATTAAGTGTGCAATGTGCCCAGATTTTGATTTATGTATAGAGTGCTTCTCTGTTGGTGCTGAGGTGACACCTCATAAAAGTAATCACCCTTATAGGGTTATGGATAATTTGTCTTTCCCCCTTATTTGCCCAGACTGGAATGCAGATGATGAAATATTGCTTCTAGAGGGAATTGAAATGTATGGCTTGGGAAACTGGACAGAAGTTGCTGAGCATGTTGGAACAAAAAACAAAGAATCATGCATAGAGCACTATAGGAATGTATACTTGAACTCCCCATTCTTTCCTCTTCCGGACATGACTCATGTTGTTGGGAAAAACAGAAAAGAACTCCTTGCCATGGCCAAAGGGCAGGGCGAGGACAAGAAAGGAATTTCCATGGGGGATCTTAGTTTAAAGGAAGATTCTCCCTTTTCTCCATCTAGAGTCAAAGTTGAAGATTCCCATAAAGCTGGTTCTGCTAACCGTTTGCCTTCAGAGTCAGATTCTGGTCCTTCTGGTAACACACATGCTGGAGCTGGTGCAAACCAAAAGGCATCTAATGCGACCGGGGGAAAAGGTGGTCCAGGAGTCATTAAAATGGAAGATTCTCAAGTAGACAGAGATTTTGGAGGAAAAAAGCCAACTTCCTCAGGAAATGAAGGTCCTTCATTAGTAGAATCAAGTGGTTATAATTCAAAAAGACAGGAATTTGATCCTGAATATGATAATGACGCTGAACAACTACTTGCTGAAATGGAATTTAAGGATACTGACACTGAGGAAGAGCGAGAGCTGAAACTACGTGTATTGCGTTTCTATTCAAAAAGGCTCGATGAAAGAAAGCGTAGGAAGGATTTCATACTTGAAAGAAATTTGTTATACCCAAATTCATTTGAGAAGGATTTAACAACTGAGGAGAAGACAATATGTCAGAAATATGACTTTTTCATGCGCTTTCATACCAAGGAAGAGCATGAGGAATTGCTTAGAACAGTTATCTCTGAACATAGAACTCGTAAAAGACTTCGAGAGCTAAAGGAAGCACGCGCAGCTGGTTGCCGCAATGTCATGGAAGCTGATAGATATATGGTACAAAAGAGAAGAAGGGAAGCTGAAGAAAGTGCTCGCAGGAAAAAAGAAAGTGCTCAGGTTGGTCCAAGCAATCAGGGGGTTCCAAATGCATTAATGTCTCCAGACTCTGCTGGCAAGGATTTGAGTGCAAGACCTGCAGGGCCTGCTACTTCGAGCTCTGTCAATGAAATGGATGTGACAGGATATTATGGGGCCGATTTACTTTCTGAACCAGAGAAACGTTTATGCTGTGAGCTAAGGTTGCCTCCAGCCACGTATCTAAAAATGCAAGAGCAACTGTCTCTACAAATACTTGCTGGAAATGTCTCTGCTAAATCGGATGCTCATCAATTGTTCAAGATAGATACCATGAAAATTGACAGGGTGTATGATATGCTCATCAAAAAGGGAATTGCTTTACCCTGA 1668 0.4167 MGRSRGNFHHADEDPNQRSRRKKNSVSGENSESGAAAGQGTSEGKRALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWTEVAEHVGTKNKESCIEHYRNVYLNSPFFPLPDMTHVVGKNRKELLAMAKGQGEDKKGISMGDLSLKEDSPFSPSRVKVEDSHKAGSANRLPSESDSGPSGNTHAGAGANQKASNATGGKGGPGVIKMEDSQVDRDFGGKKPTSSGNEGPSLVESSGYNSKRQEFDPEYDNDAEQLLAEMEFKDTDTEEERELKLRVLRFYSKRLDERKRRKDFILERNLLYPNSFEKDLTTEEKTICQKYDFFMRFHTKEEHEELLRTVISEHRTRKRLRELKEARAAGCRNVMEADRYMVQKRRREAEESARRKKESAQVGPSNQGVPNALMSPDSAGKDLSARPAGPATSSSVNEMDVTGYYGADLLSEPEKRLCCELRLPPATYLKMQEQLSLQILAGNVSAKSDAHQLFKIDTMKIDRVYDMLIKKGIALP* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1852 555 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 1 553 IPR034318 GO:0003713|GO:0006357|GO:0035065
Apr1g1852 555 MobiDBLite consensus disorder prediction 202 216 - -
Apr1g1852 555 Pfam Myb-like DNA-binding domain 108 151 IPR001005 -
Apr1g1852 555 SUPERFAMILY Homeodomain-like 102 155 IPR009057 -
Apr1g1852 555 MobiDBLite consensus disorder prediction 273 289 - -
Apr1g1852 555 Gene3D - 103 154 - -
Apr1g1852 555 Pfam Zinc finger, ZZ type 48 89 IPR000433 GO:0008270
Apr1g1852 555 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 156 IPR017930 -
Apr1g1852 555 ProSiteProfiles Myb-like domain profile. 109 152 IPR001005 -
Apr1g1852 555 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 553 - -
Apr1g1852 555 PIRSF Txn_adaptor_ADA2 36 554 IPR016827 GO:0003713|GO:0006357|GO:0035065
Apr1g1852 555 SMART zz_5 45 90 IPR000433 GO:0008270
Apr1g1852 555 MobiDBLite consensus disorder prediction 424 476 - -
Apr1g1852 555 ProSitePatterns Zinc finger ZZ-type signature. 51 78 IPR000433 GO:0008270
Apr1g1852 555 Gene3D - 40 97 IPR043145 -
Apr1g1852 555 CDD SANT 109 151 IPR001005 -
Apr1g1852 555 MobiDBLite consensus disorder prediction 1 27 - -
Apr1g1852 555 MobiDBLite consensus disorder prediction 178 192 - -
Apr1g1852 555 SMART sant 105 154 IPR001005 -
Apr1g1852 555 SUPERFAMILY Homeodomain-like 464 552 IPR009057 -
Apr1g1852 555 MobiDBLite consensus disorder prediction 1 40 - -
Apr1g1852 555 ProSiteProfiles SANT domain profile. 104 156 IPR017884 -
Apr1g1852 555 ProSiteProfiles SWIRM domain profile. 469 555 IPR007526 GO:0005515
Apr1g1852 555 Gene3D - 470 553 IPR036388 -
Apr1g1852 555 MobiDBLite consensus disorder prediction 178 294 - -
Apr1g1852 555 MobiDBLite consensus disorder prediction 438 452 - -
Apr1g1852 555 CDD ZZ_ADA2 49 97 IPR041983 -
Apr1g1852 555 MobiDBLite consensus disorder prediction 217 246 - -
Apr1g1852 555 SUPERFAMILY RING/U-box 49 111 - -
Apr1g1852 555 ProSiteProfiles Zinc finger ZZ-type profile. 46 102 IPR000433 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1852 1 552 EF-hand Containing Proteins AT3G07740 47.110 1.33e-164 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr1g1852 Myb_DNA-binding 2.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1852 K11314 - gmx:100811887 1006.51