Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1845 ATGCAAACGTCTCAGAAACACCCAACTTCAGCTGGTATCCATTTATACCACCAGCCAGTGCAAGGCATTGATCCCTACACTCATTACCAAATATTACAAAGCAATTCATGCCATGATATCCATGAGAGTGGCAGTCAGGGAACCAATATTTCTTTTGAAGCATGCAAGGAGCAATACTTTACCCTGGAATCATCTCCACCAAACACAGGTTTCATAGGTTGTGATTCTCCTTCTTGTGCAAGCGTATCATCCAATAGGAGTACTTTTTCTCCACAAGCTTCTCAGTCTTACCATTCAGATCAACATCATTCATCTGACAACACCTATGGATCACCAACAAGTGTACACTCCAGTGCGGATGATAGCTATGAATTGAAGCACAAACTTAGAGAACTAGAGATTTCATTGTTGGGGCCTGAATCAGATATTGTTGACAGTTGTCACTGCCGCTTTGAAGGTGGTCTTAAAGGAGCATCTCCATCAGCTAAATACAATTGGGATCATATTGCAGAAATGATTCCAAAGTTAGACTTGAACGAAGTCCTCATTCGATGTGCACAAGCTGTGTCTGATGATGATATTGAAACTGCTGTAGGCTTGATGAATAATGTATTGGCAAAGATGGTATCCGTTGGGGGTGATCCAATTCAAAGGTTAGGTGCTTACATGTTGGAGGGTCTAAGAGCAAGGTTAGAATCATCAGGGAGTCTAATCTACAAAGCCTTGAGATGTGAACAACCAGCAAGCAAAGATCTAATGAGTTACATGCACATCCTGTATCAAATTTGCCCATATTGGAAGTTTGCTTACATATCTGCAAATGTTATCATTGGAGAAGCAATGCAAAATGAATCAAGAATTAACATAATTGACTTCCAAATTGCACAGGGAACACAATGGTTGTTACTTATCCAGGCTCTAGCAAGTCGTCCTGGTGGGCCTCCATTCATTCGAATAACTGGTGTTGATGATTCACAATCATATCATGCCAGGGGTGGAGGACTTCACATAGTAGGAAAGCGCCTCTCAGATTATGCCAAGTCCTGTAAAGTGCCATTTGAGTTTCACAGTGTTGCCATGTCTGGCTCTGAGGTTGAACTAGAAAACCTAATGGTTCAACCCGGTGAAGCTCTTGCTGTAAATTTCCCTTTTGTTTTGCATCACATGCCAGATGAGAGTGTGAGCACAGAGAACCATAGAGACAGGCTATTGAGATTGGTGAAGAGCTTGTCGCCCAAAGTCGTGACCCTTGTTGAGCAAGAATCCAACACCAACACTTCTCCATTTTTCCAAAGGTTTGTTGAGACCTTGAACTATTACACTGCTATGTTTGAGTCAATAGATGTGGCCCTCCCAAGAGATGATAAACAAAGGATTAGTGCAGAACAACATTGTGTGGCTCGTGACATTGTTAACATGATAGCTTGTGAGGGACCAGAGAGGGTGGAAAGGCATGAACTCTTGGGAAAGTGGAGGTCAAGATTTTCAATGGCTGGTTTTTTACCATGCCCTTTGAGTTCCTCAGTGACTGCTGCAGTTAGAAATATGTTGAATGAATTCAATGAAAATTTTAGGCTTGAGCAAAGAGATGGTGCTCTGTATCTAGCTTGGAAGAAGAGATTTATGTGCACCTCTTCTGCTTGGAGATGTTACTGA 1656 0.4197 MQTSQKHPTSAGIHLYHQPVQGIDPYTHYQILQSNSCHDIHESGSQGTNISFEACKEQYFTLESSPPNTGFIGCDSPSCASVSSNRSTFSPQASQSYHSDQHHSSDNTYGSPTSVHSSADDSYELKHKLRELEISLLGPESDIVDSCHCRFEGGLKGASPSAKYNWDHIAEMIPKLDLNEVLIRCAQAVSDDDIETAVGLMNNVLAKMVSVGGDPIQRLGAYMLEGLRARLESSGSLIYKALRCEQPASKDLMSYMHILYQICPYWKFAYISANVIIGEAMQNESRINIIDFQIAQGTQWLLLIQALASRPGGPPFIRITGVDDSQSYHARGGGLHIVGKRLSDYAKSCKVPFEFHSVAMSGSEVELENLMVQPGEALAVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFVETLNYYTAMFESIDVALPRDDKQRISAEQHCVARDIVNMIACEGPERVERHELLGKWRSRFSMAGFLPCPLSSSVTAAVRNMLNEFNENFRLEQRDGALYLAWKKRFMCTSSAWRCY* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1845 551 ProSiteProfiles GRAS family profile. 169 549 IPR005202 -
Apr1g1845 551 MobiDBLite consensus disorder prediction 85 122 - -
Apr1g1845 551 MobiDBLite consensus disorder prediction 85 119 - -
Apr1g1845 551 Pfam GRAS domain family 179 549 IPR005202 -
Apr1g1845 551 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 20 548 - -
Apr1g1845 551 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 20 548 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1845 Apr-Chr1 28143965 28147905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1845 1 549 GRAS Transcription Factor Family AT4G17230 58.514 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Apr1g1845 GRAS 6.4e-127 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1845 - - gmx:100819190 983.786
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2048 9 28793060 28797387 Apr1g1845 1 28143965 28147905 PCT