Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1814 ATGAGTCAAACTATCCTTGGTTTGTTGAGGGAACAAATGGACGCTGTAGATGGAGGCCCTCGCAGGAGGCGCAGTTTCAAGGAACGCTTCGGATTCATCGCCATAGGTTGTTGTGGGGCCACCTGGGGATTCCGTTCAACGCCCTTAACCGTCAGCGACAGCGAACAACAGCCCAATCAACAACAACAACAACAACACCTTATGGAAACGGATCGGGGTCAAGGGTCGGGGGCGCACTGCGTGGGCCCGGCTCCGGCGGGTGCCAGTATGAATCTGGCGACGGCGTTGGCGGCGGAGCGACAAGTTCGGGGACCGGAGGAGGAAGCGGGTAGGGTGCCGGGCACGCCATGGAGGGTGTCGCTGATGAGGCTGTTGGAGGAGACGGAGGGTGGGGATGCGGAGGAGAAAGGAGGAGGAGCTGTGGGGAATGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGTGCAGCGTTCATCCCATGTGGGCACACTTTTTGCAGGGTGTGTTCCAGAGAATTGTGGCTTAATCGAGGGTCTTGTCCCCTTTGCAATCGTTCCATCCTCGAGATTCTCGACATTTTCTAG 588 0.5765 MSQTILGLLREQMDAVDGGPRRRRSFKERFGFIAIGCCGATWGFRSTPLTVSDSEQQPNQQQQQQHLMETDRGQGSGAHCVGPAPAGASMNLATALAAERQVRGPEEEAGRVPGTPWRVSLMRLLEETEGGDAEEKGGGAVGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1814 195 Pfam Zinc finger, C3HC4 type (RING finger) 144 189 - -
Apr1g1814 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 194 IPR013083 -
Apr1g1814 195 MobiDBLite consensus disorder prediction 49 83 - -
Apr1g1814 195 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 195 - -
Apr1g1814 195 PANTHER OS01G0917900 PROTEIN 1 195 - -
Apr1g1814 195 CDD RING-HC 147 184 - -
Apr1g1814 195 SMART ring_2 147 184 IPR001841 -
Apr1g1814 195 SUPERFAMILY RING/U-box 143 192 - -
Apr1g1814 195 MobiDBLite consensus disorder prediction 49 71 - -
Apr1g1814 195 ProSiteProfiles Zinc finger RING-type profile. 147 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1814 Apr-Chr1 27854160 27854747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1814 5 195 C3H Transcription Factor Family AT4G22250 53.883 4.03e-63 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1814 - - gmx:100804292 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2075 9 28970820 28972239 Apr1g1814 1 27854160 27854747 PCT