Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1807 ATGGAACGTTTTGCCAGGTCAGCTCGGGCATGGCGTCGCCATTGCCCTTCATTTCCCTCTTTCCGAACCCTAACTTCTCACTCCTCGCGCCGCATTCCCACTTCTTCATATCCCAAAATCGTATCTGCTTGGTCTACCTCCTCCGTGTCTGATGTTTCGAGTTCCAGAATTTTGCGCGAGGATTTTTGGTTGCTTCCTGCTGTGCTAGGTGGTGTTTTTGGAGTTGGATTGGTGGAAACGGCGTATGCGGATAATGCTGGGGAGGATGTTCAAGAAACTGCTAAGAAAGAACGCGAGCGAATTGAGGACTTGATCAAAAGCAGAGGAATTCGAATTGGTTCTTATCCTCGCTTCACTGTTTCCGTTAAAGGCCAAAAGGTCAGTATAAAGTTTCAAATTCCTCCTGGTTGTGAAATCCCACAACTTATTGCAAATCTCACTGCACATCTTGGACTGAAAGATGAAGGCCATGGTGGTGGTTCAGATATGTTATTGCGAGCTTGGGACAGCACAGTGGCTTGGCAACTCACCCTTACTCATCCATCAAAACAAAAACATATTCAAGAGAATCACCCATCTTCAACAGATATATATGCAGATGATAGAGATCTATGTGTACTTATATTTCATTCTCTCATTGGGTCAGATAAAGCTGAAATTGAATTCATTAAGCAAGGTAGCTTGAGTCCTGAAGAGCTTGATGCTTTCATCTCTGTTTTACAATTAGCTGGTAACAAGTTGGGACTAAGAAACCCTCTGGAAAGAAGACCTAGGGAAGAGACCCAAAAGGTGCCATCTGTAGATAAATCTATTTCCGATCTCAAGGGTATGGGAGTGAGAATTTATGGACTTGATGAACCCATGGGTATATCGAATGGTAAGATATCATGGGACAACATTGCTGGGTACGACCATCAAAAAAGAGTAATAGAAGATACCATACTGTTGGCTCTGCATAGTCCTGAAGTATATGATGATATTGCTCGAGGGACTCGTCAAAAGTTTGAATCAAACAGACCTCGAGCTGTGCTGTTTGAAGGTCCACCAGGTACAGGGAAAACTTCATGTGCTCGTGTTGTTGCCAATCAAGCGATTGATTCTTTTGCTGCTGCTCGTGATATTGAAATGCATGAAGCTACACGCAGAATATTGTCAGTATTATTGCGACAGATAGATGGCTTTGAGCAGGATAAGAAAGTTGTTGTCATTGCTGCCACAAATAGAAAGGAAGACCTTGATCCCGCATTAATCAGTCGGTTTGATACTATGATCCCTTTTGGCTTGCCCGATCATCATAATCGTCAGGAAATAGCATCCAAATATGCAAAGCACCTGTCCACACCCGAACTAGATGAACTGGCAAGAGTTACAAACGATATGTCTGGAAGAGATATTAGAGACCTTTGTCTGCAAGCAGAACGATCTTGGGCGTCGAAGATTATTCGAGGACAAGTGGCTAAAGATGGCGAACAAGCGAACCTTCCACCTTTGCAAGAATATATAGAGTGCGCTACGAGTCGACGCGAGGCGCTGCTTAGTGCCGCAAACAAGAATCTCCGAAGTTCTTCCCGCCGCAGGATTATAAGTGATTAA 1593 0.4388 MERFARSARAWRRHCPSFPSFRTLTSHSSRRIPTSSYPKIVSAWSTSSVSDVSSSRILREDFWLLPAVLGGVFGVGLVETAYADNAGEDVQETAKKERERIEDLIKSRGIRIGSYPRFTVSVKGQKVSIKFQIPPGCEIPQLIANLTAHLGLKDEGHGGGSDMLLRAWDSTVAWQLTLTHPSKQKHIQENHPSSTDIYADDRDLCVLIFHSLIGSDKAEIEFIKQGSLSPEELDAFISVLQLAGNKLGLRNPLERRPREETQKVPSVDKSISDLKGMGVRIYGLDEPMGISNGKISWDNIAGYDHQKRVIEDTILLALHSPEVYDDIARGTRQKFESNRPRAVLFEGPPGTGKTSCARVVANQAIDSFAAARDIEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKEDLDPALISRFDTMIPFGLPDHHNRQEIASKYAKHLSTPELDELARVTNDMSGRDIRDLCLQAERSWASKIIRGQVAKDGEQANLPPLQEYIECATSRREALLSAANKNLRSSSRRRIISD* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1807 530 SMART AAA_5 339 430 IPR003593 -
Apr1g1807 530 Pfam ATPase family associated with various cellular activities (AAA) 343 364 IPR003959 GO:0005524|GO:0016887
Apr1g1807 530 Pfam ATPase family associated with various cellular activities (AAA) 365 427 IPR003959 GO:0005524|GO:0016887
Apr1g1807 530 Gene3D - 365 428 IPR027417 -
Apr1g1807 530 CDD AAA 332 428 - -
Apr1g1807 530 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 71 364 - -
Apr1g1807 530 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 365 514 - -
Apr1g1807 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 294 479 IPR027417 -
Apr1g1807 530 Gene3D - 287 363 IPR027417 -
Apr1g1807 530 Gene3D - 429 496 - -
Apr1g1807 530 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 365 514 - -
Apr1g1807 530 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 71 364 - -
Apr1g1807 530 ProSitePatterns AAA-protein family signature. 400 419 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1807 Apr-Chr1 27771151 27777061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1807 339 495 Calmodulin-binding Proteins AT3G56690 29.469 4.91e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1807 - - gmx:100803362 813.142