Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1805 ATGGAGGGTAGTTCTAATGCCACTTCTTATTTGATGGCTTTTGGAGAAAACAGTGGTGGGTTATGTCCAATGACGATGATGCCTTTAGTGACTTCTCATCATGGCGCTCATCATCCAATACATCCTAATAATAATTCTAATACTAATGCAAACACAAACTGTCTCTTCCTTCCCAACTGCAGTAACAGTGGAAGCCCTTCTATCATGCTAGACAATAACCACAACACCACCAATAACAACAGCAACAACGCTGGGTTAGGGTACTATTTCATGGAGAGTGACCACCACCACCACCACAACAACAATGGAAGCTCATCTTCCTCTTCTTCTTCAGCTATCAAGGCTAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCATACGTCAATTGTCAAAAGGTTGGAGCACCACCTGAAGTAGTGGCAAGGTTAGAAGAAGCATGTGCTTCTGCAGTGACGATGGCAGGTGAAGCAGCTGGATCAAGCTGCATAGGTGAAGATCCAGCTTTGGATCAGTTCATGGAGGCTTATTGCGAGATGCTGACCAAGTACGAGCAAGAACTCTCCAAACCCTTAAAGGAAGCCATGCTCTTCCTTCAAAGGATTGAGTGCCAGTTCAAAAATCTCACAATTTCTTCTTCTGACATTGCTTGCAATGACGGTGCTGATAGGAATGGATCATCTGAAGACGATGTTGATCTACACAACATCATAGATCCACAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTTTGCGCAAGTATAGCGGATACTTGGGTAGTCTGAAGCAGGAATTCATGAAGAAGAGGAAAAAGGGAAAGCTACCTAAAGAGGCAAGGCAACAATTATTAGAATGGTGGAGCAGACATTACAAATGGCCTTACCCATCTGAATCGCAGAAGCTTGCTCTTGCAGAGTCGACAGGTTTGGATCAGAAGCAAATTAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGGTGGATCCAAGCCATCCACACTATTACATGGACAATGTTCTGGGCAATCCCTTTCCCATAGATCTCTCCAACCCCATGCTCTAG 1101 0.4478 MEGSSNATSYLMAFGENSGGLCPMTMMPLVTSHHGAHHPIHPNNNSNTNANTNCLFLPNCSNSGSPSIMLDNNHNTTNNNSNNAGLGYYFMESDHHHHHNNNGSSSSSSSSAIKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAVTMAGEAAGSSCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLTISSSDIACNDGADRNGSSEDDVDLHNIIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMDNVLGNPFPIDLSNPML* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1805 366 ProSiteProfiles ELK domain profile. 248 268 IPR005539 GO:0003677
Apr1g1805 366 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 4 355 - -
Apr1g1805 366 SMART KNOX1_2 111 155 IPR005540 GO:0003677|GO:0005634
Apr1g1805 366 SMART HOX_1 270 335 IPR001356 GO:0003677
Apr1g1805 366 Pfam ELK domain 248 269 IPR005539 GO:0003677
Apr1g1805 366 ProSiteProfiles 'Homeobox' domain profile. 268 331 IPR001356 GO:0003677
Apr1g1805 366 SMART ELK_2 248 269 IPR005539 GO:0003677
Apr1g1805 366 CDD homeodomain 280 332 IPR001356 GO:0003677
Apr1g1805 366 Pfam Homeobox KN domain 288 327 IPR008422 GO:0003677|GO:0006355
Apr1g1805 366 ProSitePatterns 'Homeobox' domain signature. 306 329 IPR017970 GO:0000981|GO:0006355
Apr1g1805 366 Gene3D - 273 335 - -
Apr1g1805 366 PANTHER - 4 355 - -
Apr1g1805 366 Pfam KNOX2 domain 165 212 IPR005541 GO:0003677|GO:0005634
Apr1g1805 366 SUPERFAMILY Homeodomain-like 270 346 IPR009057 -
Apr1g1805 366 Pfam KNOX1 domain 112 151 IPR005540 GO:0003677|GO:0005634
Apr1g1805 366 SMART KNOX2_2 162 213 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1805 Apr-Chr1 27742047 27747594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1805 113 366 Homeobox Transcription Factor Family AT1G62360 79.771 1.47e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Apr1g1805 KNOX2 2.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1805 - - gmx:100805837 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2079 9 29017233 29022141 Apr1g1805 1 27742047 27747594 PCT