Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1800 ATGGCCACAAACACACACCAAAAACCATATCCCCTTATACATGTTTTTCTTCTCTTTGTTTTGTTGATAATTACGAGAACCCAAGGTAGATGCTGGTCAGGTTGCAACCTTGCTCTAGCTTCCTATTATATATGGGAAGGCACCAACCTCACTTACATTAGCAAGCTCTTTGGGAAGCCCACGTCGGAAATTTTGAAGTACAACCCAAGTGTTCAAAATCCAGACGTGATTCAAAGCCGAACGCGGATCAACGTGCCCTTTTCGTGTGACTGTTTAAACAGTGAGTTTTTGGGCCACACTTTCTCGTACACAACCCACCATGGTGACAACTACGGACTCATTGCCGATGTTGATTTCTCCAACCTCACGACGGAGGATTGGGTGAGTAAGGTGAACCGATACCAACCTCATCAGATACCAGACAACGTCAACATCAATGTCACAATCAATTGCTCCTGCGGAGACCGGCACGTGTCTAAGGATTACGGGCTGTTCATGACGTACCCACTTCGGGTGGGTGAGAACTTGCAGGGGGTGGCGGCGGAATCCGGTCTGCCGGCGGAGCTTCTGCTAAGGTACAATCCAACCTCAGATTTCAGTGCTGGCTATGGACTCGTGTTTGTGCCGGCCAAAGATGAACATGGAAAGTTTCCACCACTTCAGCTGGGATGCTGACATGTTATACAAATTTAAATAGGAATGTCTAGTGGAGCCATTGCTGGCATAGTTGTTGGCGGAGCTGTTGGGATCTTGTTACTTTTGGCACTTACTCTGTATGTTGGACTATACAGAAGAAAGAAAGTGGCTGAGATATCCCTTCTCCCTGTCACAGGAGCATCTGAAGATCAGTATAGTCAACTCCAGCATGGTTGTGGAAGCAATGATAAGGCATCAGAATCTTCTGTTGTTGCTTCTTCTAGGTTAACAGGTATTACAGTGGACAAGTCTGTGGAGTTTTCTTTTGAGGAGTTAGCCAAAGCTACTAATGGCTTTAGTGTGTCTAATATAATTGGTAAAGGTGGCTTTGGATCTGTTTACTACGCTGATCTTAGAGATGAGAAAGTTGCAATTAAGAAAATGGATATGCAAGCATCAAATGAATTCCTTGCTGAACTTAAGGTTCTGACACATGTCCATCACTTGAACTTGGTGCGGTTAATAGGATATTGTGTTGAGAGCTCCTTATTTTTGGTTTATGAGTATATTGAGAACGGCAATTTAAGTCAACATTTGCGAAGCTCAGGGAGGGATCCGTTACCATGGCCAGCTAGAGTTCAAATTGCACTGGATGCAGCAAGAGGACTGGAATATATCCATGAACATACAGTTCCTGTCTATATTCATCGAGATATTAAATCAGCAAACATTTTGATAGACAAAAACTTCCGTGCAAAGGTTGCTGATTTCGGTCTAACAAGATTGACTGAATATGGTAATTCTTCATTACAAACGCGTCTTGTGGGTACATTTGGTTATATGCCTCCAGAATATGCGCAATATGGTGAAGTTTCCCCCAAAATAGATGTATATGCTTTTGGTGTTGTTCTTTATGAGCTCATATCAGGCAAGGAAGCTATTGTCAAGACAAACGAAGCCGAGAATGAATCAAAAGGACTAGTTGCCTTGTTTGAAGAAGTTTTCGGTCTGTCAGACCCAAAAGAAAATCTTGGCACGCTTGTTGACCCTAAATTTGGTGATAACTACCCTCTTGACTCGGTGTTTAAGATGTCTCAACTTGCCAAAGTTTGTACACATGAAAACCCTCAACTTAGGCCAAGCATGAGATCAATTGTAGTTGCCTTAATGACACTTTCATCTGCAGCTGAGGATTGGGATGTTGGCTCCTTTTATGAAAACCAGGCTCTGGTGCACTTAATGTCTGGAAGGTAG 1890 0.4317 MATNTHQKPYPLIHVFLLFVLLIITRTQGRCWSGCNLALASYYIWEGTNLTYISKLFGKPTSEILKYNPSVQNPDVIQSRTRINVPFSCDCLNSEFLGHTFSYTTHHGDNYGLIADVDFSNLTTEDWVSKVNRYQPHQIPDNVNINVTINCSCGDRHVSKDYGLFMTYPLRVGENLQGVAAESGLPAELLLRYNPTSDFSAGYGLVFVPAKDEHGKFPPLQLGC*HVIQI*IGMSSGAIAGIVVGGAVGILLLLALTLYVGLYRRKKVAEISLLPVTGASEDQYSQLQHGCGSNDKASESSVVASSRLTGITVDKSVEFSFEELAKATNGFSVSNIIGKGGFGSVYYADLRDEKVAIKKMDMQASNEFLAELKVLTHVHHLNLVRLIGYCVESSLFLVYEYIENGNLSQHLRSSGRDPLPWPARVQIALDAARGLEYIHEHTVPVYIHRDIKSANILIDKNFRAKVADFGLTRLTEYGNSSLQTRLVGTFGYMPPEYAQYGEVSPKIDVYAFGVVLYELISGKEAIVKTNEAENESKGLVALFEEVFGLSDPKENLGTLVDPKFGDNYPLDSVFKMSQLAKVCTHENPQLRPSMRSIVVALMTLSSAAEDWDVGSFYENQALVHLMSGR* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1800 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Apr1g1800 627 Gene3D Phosphorylase Kinase; domain 1 310 399 - -
Apr1g1800 627 SMART serkin_6 329 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1800 627 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-LIKE 13 627 - -
Apr1g1800 627 ProSiteProfiles LysM domain profile. 40 85 IPR018392 -
Apr1g1800 627 Gene3D Transferase(Phosphotransferase) domain 1 400 611 - -
Apr1g1800 627 ProSiteProfiles Protein kinase domain profile. 329 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1800 627 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 13 627 IPR044812 GO:0019199|GO:0045087
Apr1g1800 627 Pfam Protein tyrosine and serine/threonine kinase 331 598 IPR001245 GO:0004672|GO:0006468
Apr1g1800 627 SUPERFAMILY Protein kinase-like (PK-like) 309 599 IPR011009 -
Apr1g1800 627 CDD STKc_IRAK 335 596 - -
Apr1g1800 627 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1800 Apr-Chr1 27691936 27699461 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1800 11 627 Receptor kinase-like Gene Family AT3G21630 53.736 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Apr1g1800 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1800 - K13429 gmx:100802308 976.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1800 1 27691936 27699461 Apr1g1800 1 27691936 27699461 ECH