Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1792 ATGGCCACTTTAAGCTCTCTCCTAGTGCTCTCGTTCTTTCTACCTACCATAGTTTCAACACCTAATAGAGATTCAATAGATGAGTTCAACACCCTTTCTCCTATTCCAAGCTATCTCGCAAAGAGTCCTAAGAATGTTGACATGAACACAATAGACTCATGCTGGCGAGCCCAAACAAATTGGGCTTCAAATCGCCAATCTTTGGCTGATTGTGCCGTTGGTTTTGGCAAAGATGCCATAGGCGGTAAGTATGGGGATATATATGAAGTAACCGATCCCTCTGATGACCCCATTAACCCAAAACCAGGCACACTTCGTTATGGTGCAATCCAAACACAGCCCCTTTGGATAACTTTCGCCAATGACATGGTTATCACGCTGAAGAACGAGCTTATGGTGAATAGCTACAAAACCATTGATGGGAGAGGAGCTAATGTAGAGATTGCAAATGGGCCTTGCATTACAATACAAGGTGTTAGCCATGTTATTTTACATGGAATAAGCATTCATGATTGTAAACCTGGTAAGGCTGGCATGGTTAGGAGCACTACTGAGCATGTTGGGTATCGTGAAGGCTCTGATGGAGATGCCATTAGTATATTTGCCTCCTCCAATCTCTGGATTGACCATTGCTTTTTGGCTCGTTGCACTGATGGTCTCATTGATGTTATTCATGCCTCAACTGCTATCACTATCTCTAACAATTACTTCACACAGCATGACAAAGTGATGCTGCTAGGACACAGCGATGAATACAGAGCGGATAGAATAATGAAAGTAACGGTGGCTTTCAACCGCTTTGCTAGCGGCCTAGTGGAAAGAATGCCAAGAGTAAGATTTGGTTATGCCCATGTTGTAAACAATTGGTATGACGAGTGGCTCATGTATGCCATTGGTGGCAGTGCCGACCCTACCATTTTTAGTGAAGGAAACTATTTTATGGCTTCAAATGATCCTGCTGCAAAACAGGTTACGAAGAGGGAAACTAGTGAAAACTGGAATAGTTGGAAATGGAGGACTTTGGGGGATGAATTCTTAAATGGTGCTTATTTTGTGCCATCTGGGTATGGAAGTTGTACCCCATTATATTCATCGGCTCAAAGTTTTATAGCGGCTGAGGCATCCACGGTGCCTTTGTTAACTTTTAATGCAGGGCCACTGAACTGTGTTGTTAACTAA 1179 0.4309 MATLSSLLVLSFFLPTIVSTPNRDSIDEFNTLSPIPSYLAKSPKNVDMNTIDSCWRAQTNWASNRQSLADCAVGFGKDAIGGKYGDIYEVTDPSDDPINPKPGTLRYGAIQTQPLWITFANDMVITLKNELMVNSYKTIDGRGANVEIANGPCITIQGVSHVILHGISIHDCKPGKAGMVRSTTEHVGYREGSDGDAISIFASSNLWIDHCFLARCTDGLIDVIHASTAITISNNYFTQHDKVMLLGHSDEYRADRIMKVTVAFNRFASGLVERMPRVRFGYAHVVNNWYDEWLMYAIGGSADPTIFSEGNYFMASNDPAAKQVTKRETSENWNSWKWRTLGDEFLNGAYFVPSGYGSCTPLYSSAQSFIAAEASTVPLLTFNAGPLNCVVN* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1792 392 PANTHER PECTATE LYASE 32 391 - -
Apr1g1792 392 Gene3D - 48 388 IPR012334 -
Apr1g1792 392 SMART amb_all 122 319 IPR002022 -
Apr1g1792 392 Pfam Pectate lyase 128 313 IPR002022 -
Apr1g1792 392 PRINTS Pollen allergen Amb family signature 71 88 IPR018082 -
Apr1g1792 392 PRINTS Pollen allergen Amb family signature 94 119 IPR018082 -
Apr1g1792 392 PRINTS Pollen allergen Amb family signature 130 146 IPR018082 -
Apr1g1792 392 PRINTS Pollen allergen Amb family signature 194 215 IPR018082 -
Apr1g1792 392 PRINTS Pollen allergen Amb family signature 274 293 IPR018082 -
Apr1g1792 392 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Apr1g1792 392 PRINTS Pollen allergen Amb family signature 336 360 IPR018082 -
Apr1g1792 392 PRINTS Pollen allergen Amb family signature 366 389 IPR018082 -
Apr1g1792 392 SUPERFAMILY Pectin lyase-like 48 386 IPR011050 -
Apr1g1792 392 PANTHER PECTATE LYASE 18-RELATED 32 391 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1792 Apr-Chr1 27652027 27654454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1792 1 389 Polysaccharide Lyase AT4G22080 66.838 0.0 544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1792 1 27652027 27654454 Apr1g1792 1 27652027 27654454 ECH
Apr9g2087 9 29063839 29065933 Apr1g1792 1 27652027 27654454 PCT