Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1790 ATGGACAAAGGATGGGGACTCACCCTTGATACTTCTTCCTCTCCATCCCTCCCATTATTTCCTTCCAAACAGCCACCCACAACCATAAACTCTTTCTCTAACGATAACATGTTCCCTCTTCTCGGTTTCCCTGTCAACCTTAGAACCGTCACCAACAAGGAAGACGATGATAACCGCAAAGTCCTCGGTGAAGTCGACTTTTTCTCTGATAGAAACGTTAAACCCAACATCATCAAGAAGGAAATTGATGACAAACCTCTCCAAGTAAATACTGGTTTACAACTCCTTACTGCTAACACCGGGAGCGATCAATCTACTGTGGATGATGGGGTTTCATCTGATGCTGAAGATAAGCGAGCCAAGACAACTGAGCTTGCACAGTTGCAAGGGGAGCTTCAACGCATGAATGCGGAGAACAAGAAGCTGAAAGAGATGCTCAGCCATGTGAGCGGTAACTACACGGCCTTGCAGATGCATCTTATGACTTTGATGCAACAAAACCAGCGCACGGAAAGCACTGAAAATGAGGTTGTTCAAGGAAAAACTGAGGAGAAAATTCACGGTGTTGGTGAGGGAAAGGTACCGAAACAGTTTCTTGATATAGGTCCTAGTGGTACAGCTGAAGTTGATGATCAAGTATCCGATTCTTCTTCTGAAGAAAGAACAAGATCGAGCACACCTCAGAACAATAACACTGAAGTTGGAACAAGAGATTGCGTGAGAAATAATACCAATAATAGTAAAAATGAGTCGGGTAGGGAAGAGAGTCTAGACTCAGAGTCACAAGGTTGGGCTCCCAACAAGCTTCAAAAGCTAAACCCTTCCAGTTCTATGGATCAATCCACTGCAGAAGCTACAATGAGAAAAGCACGGGTCTCAGTTCGTGCCAGATCGGAAGCTCCCATGATCAGTGATGGGTGCCAATGGCGAAAATATGGACAAAAAATGGCTAAGGGAAACCCATGTCCTCGAGCTTATTATAGATGCACCATGGCAGTTGGTTGTCCAGTTCGCAAACAAGTTCAACGTTGTGCTGAGGATAGAACAATTTTGGTGACAACATATGAAGGCACACATAACCATCCACTGCCACCAGCGGCTATGGCAATGGCATCAACAACAACAGCTGCTGCTAGCATGTTGTTGTCAGGGTCAATGTCCAGTGCAGATGGAATAATGAACCCCAATTTGCTAGCTAGAGCAATTCTCCCTTGTTCATCTAGCATGGCAACACTTTCAGCATCAGCACCATTTCCCACTGTGACATTAGACCTCACACACAACCCAAACCCATTACAACTCCAAAGAACTCCTACCCCATTCCAAGTACCCTTTCTCCCAGGACAACCTCAGAACTTTGGATCTGGAGCAACCCCATTAGCACAAGCTCAAGCACTTTATAATCAATCCAAATTCTCTGGTCTTCAGTTATCTCAGGAAGTTGGATCTTCCCATGCTCCTAGACCGCTCTTACAACCAACCCAACAACCCTCACTGGCTGATACAGTCAGCGCCGCCACCGCAGCCATCACTGCTGACCCAAACTTCACCGCTGTTCTCGCTGCCGCCATCTCCTCCATCATTGGTGGGGGTGCCCAAGCAAACAATAGTAACAGCAACAACAACAATAACAGGACTACAATTAGCAGCTTCTCAGGAAACTGA 1665 0.4601 MDKGWGLTLDTSSSPSLPLFPSKQPPTTINSFSNDNMFPLLGFPVNLRTVTNKEDDDNRKVLGEVDFFSDRNVKPNIIKKEIDDKPLQVNTGLQLLTANTGSDQSTVDDGVSSDAEDKRAKTTELAQLQGELQRMNAENKKLKEMLSHVSGNYTALQMHLMTLMQQNQRTESTENEVVQGKTEEKIHGVGEGKVPKQFLDIGPSGTAEVDDQVSDSSSEERTRSSTPQNNNTEVGTRDCVRNNTNNSKNESGREESLDSESQGWAPNKLQKLNPSSSMDQSTAEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILVTTYEGTHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATLSASAPFPTVTLDLTHNPNPLQLQRTPTPFQVPFLPGQPQNFGSGATPLAQAQALYNQSKFSGLQLSQEVGSSHAPRPLLQPTQQPSLADTVSAATAAITADPNFTAVLAAAISSIIGGGAQANNSNSNNNNNRTTISSFSGN* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1790 554 MobiDBLite consensus disorder prediction 258 282 - -
Apr1g1790 554 MobiDBLite consensus disorder prediction 7 25 - -
Apr1g1790 554 Pfam WRKY DNA -binding domain 305 362 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g1790 554 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 36 543 IPR044810 GO:0003700
Apr1g1790 554 SMART WRKY_cls 303 363 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g1790 554 MobiDBLite consensus disorder prediction 1 25 - -
Apr1g1790 554 MobiDBLite consensus disorder prediction 478 497 - -
Apr1g1790 554 MobiDBLite consensus disorder prediction 100 119 - -
Apr1g1790 554 ProSiteProfiles WRKY domain profile. 298 364 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g1790 554 PANTHER WRKY TRANSCRIPTION FACTOR 6 36 543 - -
Apr1g1790 554 MobiDBLite consensus disorder prediction 533 554 - -
Apr1g1790 554 Coils Coil 118 152 - -
Apr1g1790 554 MobiDBLite consensus disorder prediction 219 250 - -
Apr1g1790 554 MobiDBLite consensus disorder prediction 167 282 - -
Apr1g1790 554 Gene3D WRKY domain 288 365 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr1g1790 554 MobiDBLite consensus disorder prediction 176 191 - -
Apr1g1790 554 SUPERFAMILY WRKY DNA-binding domain 296 364 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1790 Apr-Chr1 27635834 27638809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1790 1 542 WRKY Transcription Factor Family AT1G62300 51.244 8.02e-161 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr1g1790 WRKY 6.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1790 - - ccaj:109803638 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1790 1 27635834 27638809 Apr1g1790 1 27635834 27638809 ECH
Apr2g2029 2 25631244 25634077 Apr1g1790 1 27635834 27638809 ECH
Apr3g1174 3 26270322 26273053 Apr1g1790 1 27635834 27638809 ECH