Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1788 ATGGACTGGACTAGAGGCCATGTGCTTGGCCGCGGCTCCACCGCCGCCGTGTACGTCGCCGAGTCCCGCCCGTCCGGTGAAGTCTTTGCCGTCAAGTCGGCGGAGCTTCACCTTTCGGAATTCCTTAGAAGGGAAGAGGGGATTCTTTCCACACTGAATTGTCCTCAAATTGTGGCTTACCAAGGTTGTGACATCACATGTGAGAATGGTGTGCACTGGTTCAACTTGTTCATGGAGTATGCACCTCATGGGACCCTCGCTGGGCACGGTGGTGGAATGGAAGAAGGTGTGGTGGGGTCCTACACGCGCCAAATTCTTGAGGGATTGAACTATCTTCATTCAAAGGGGATAGTGCATTGCGATGTGAAGGGACAGAACGTGTTGGTGACGGAGGATGGGGCTAAAATTGCTGACTTGGGTTGTGCTCGGAGAGTGGCGGAGTCGTCAGCGATTGCCGGCACGCCGGCGTTCATGGCACCTGAGGTGGCGCGTGGGGAGGAGCAGGGGTTCCCTGCTGACGTGTGGGCTTTGGGGTGCACTGTGCTTGAGATGGTCACCGGGAAGTCGCCGTGGCACGGCGTTTGTGATCCGACGGCTGTGATTTATAGGGTTGGATTCTCCGGCGAGGTGCCGGAGATCCCTAGTTTTGTGTCGGAGCAGGGGAAGGATTTTTTGGGAAAGTGTTTGAAGAGGGACCCACATGAGAGGTGGACAGTGGAAGAGCTTCTAGGACACAGTTTTGTTAAGGAGTGCAAGGAATTTAAGTTAACGTTGGATTCGGACACTCCCACGACAGTGTTGGAACGAGGGTTTTGGGACTCGTTGGAACCAATTCAAGATCCCGCACGTGATTGTCCTTCTCCTAGGGACAGAATTCGTAGGTTGTTTACGGATAAGCCCGTTTGGGAATGCCATTATGATGATGATGATCGATGGGTCATGGTGAGAAGCAATGATGTCCATGACAAGCACTTAGAGTTGGAGGGGTTGTCCTTTGAGAAAATGGACACTGATTGCAATGTCCTTAGTGATGAGGAGAATGGTTTGGTAGTTTTTGTTGAACCAAAATTATTAGATGCAACTGTAATTGAATTGAGTAGATGGAATGCTATTTGTGATGATTGTTATCTTAGAGACAGCGATTGTGGCTGTCACGTGCGGTTCGCTTAA 1170 0.5128 MDWTRGHVLGRGSTAAVYVAESRPSGEVFAVKSAELHLSEFLRREEGILSTLNCPQIVAYQGCDITCENGVHWFNLFMEYAPHGTLAGHGGGMEEGVVGSYTRQILEGLNYLHSKGIVHCDVKGQNVLVTEDGAKIADLGCARRVAESSAIAGTPAFMAPEVARGEEQGFPADVWALGCTVLEMVTGKSPWHGVCDPTAVIYRVGFSGEVPEIPSFVSEQGKDFLGKCLKRDPHERWTVEELLGHSFVKECKEFKLTLDSDTPTTVLERGFWDSLEPIQDPARDCPSPRDRIRRLFTDKPVWECHYDDDDRWVMVRSNDVHDKHLELEGLSFEKMDTDCNVLSDEENGLVVFVEPKLLDATVIELSRWNAICDDCYLRDSDCGCHVRFA* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1788 389 CDD STKc_MAPKKK 2 248 - -
Apr1g1788 389 SMART serkin_6 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1788 389 Gene3D Transferase(Phosphotransferase) domain 1 2 282 - -
Apr1g1788 389 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 336 - -
Apr1g1788 389 SUPERFAMILY Protein kinase-like (PK-like) 2 276 IPR011009 -
Apr1g1788 389 PANTHER MAP KINASE KINASE KINASE 1 336 - -
Apr1g1788 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Apr1g1788 389 Pfam Protein kinase domain 5 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1788 389 ProSiteProfiles Protein kinase domain profile. 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1788 389 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1788 Apr-Chr1 27620332 27621790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1788 1 342 MAP Kinase Kinase Kinase AT4G26890 48.087 1.11e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Apr1g1788 Pkinase 8.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1788 K20716 - gmx:100802174 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1788 1 27620332 27621790 Apr1g1788 1 27620332 27621790 ECH
Apr2g2028 2 25618909 25620081 Apr1g1788 1 27620332 27621790 ECH
Apr3g1173 3 26259266 26260546 Apr1g1788 1 27620332 27621790 ECH