Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1779 ATGGCTGATGCTACACAACCTAATGCTGAGTTGTTGGAGTGGCCAAAGAAAGATAGGCGCCGCTTCCTGCATGCTGTATACCGTGTTGGTGATCTTGATCGCACCATTAAGTTTTATACTGAATGTTTTGGTATGAAGCTTTTGAGGAAAAGGGATGTTCCTGAAGAGAAATATGCCAATGCTTTTCTTGGATTTGGACCTGAACAATCACATTTTGTTGTGGAATTAACATATAATTATGGGGTGACGTCGTACGATATTGGAACTGGCTTTGGACATTTTGCTATTGCAACTCCAGATGTTTACAAACTGGTTGAAGACATCCGAGCTAAGGGTGGAAACATCACTAGGGAGCCTGGTCCAGTTAAGGGTGGGACCTCTGTTATAGCCTTTGTCAAGGATCCTGATGGATACTCTTTTGAGCTCATCCAAAGAGCTTCAACCCCTGAGCCATTGTGCCAAGTAATGCTTCGCGTTGGTGATTTAGAGCGCTCAATTAAGTTTTATGAAAAGGCTTTGGGTTTGAGGGTGGTAAAGAAGGTTGATAGACCGGAATACAAGTACACTTTAGCCATGCTTGGGTATGCAGAGGAGCATGAGACAACTGTGTTGGAGCTGACGTATAACTATGGTGTCACGGAATACACCAAGGGAAATGCTTATGCACAGGTCGCTATTGGTACAGATGATGTATACAAGAGTGGTGAGGTAGTCAACATAGTCACACAAGAGCTTGGAGGGAAGATTACTCGGCAACCAGGGCCGCTCCCTGGCATTAACACAAAGATCACTTCTTTCTTAGATCCAGATGGATGGAAGACTGTCTTGGTTGACAATCAAGATTTTCTGAAGGAATTGGAGTGA 864 0.4387 MADATQPNAELLEWPKKDRRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYANAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATPDVYKLVEDIRAKGGNITREPGPVKGGTSVIAFVKDPDGYSFELIQRASTPEPLCQVMLRVGDLERSIKFYEKALGLRVVKKVDRPEYKYTLAMLGYAEEHETTVLELTYNYGVTEYTKGNAYAQVAIGTDDVYKSGEVVNIVTQELGGKITRQPGPLPGINTKITSFLDPDGWKTVLVDNQDFLKELE* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1779 287 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 21 145 IPR037523 -
Apr1g1779 287 Gene3D - 148 287 IPR029068 -
Apr1g1779 287 PANTHER LACTOYLGLUTATHIONE LYASE-LIKE PROTEIN 11 287 - -
Apr1g1779 287 PANTHER LACTOYLGLUTATHIONE LYASE 11 287 - -
Apr1g1779 287 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 152 279 IPR029068 -
Apr1g1779 287 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 23 142 IPR004360 -
Apr1g1779 287 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 154 273 IPR004360 -
Apr1g1779 287 TIGRFAM glyox_I: lactoylglutathione lyase 9 154 IPR004361 GO:0004462|GO:0046872
Apr1g1779 287 TIGRFAM glyox_I: lactoylglutathione lyase 152 282 IPR004361 GO:0004462|GO:0046872
Apr1g1779 287 ProSitePatterns Glyoxalase I signature 2. 88 100 IPR018146 GO:0004462|GO:0046872
Apr1g1779 287 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 151 279 IPR037523 -
Apr1g1779 287 ProSitePatterns Glyoxalase I signature 1. 154 175 IPR018146 GO:0004462|GO:0046872
Apr1g1779 287 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 20 148 IPR029068 -
Apr1g1779 287 CDD GlxI_Ni 23 143 - -
Apr1g1779 287 Gene3D - 1 147 IPR029068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1779 Apr-Chr1 27531867 27535054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1779 154 278 Calmodulin-binding Proteins AT1G08110 29.333 3.52e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1779 K01759 - gmx:100794901 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1779 1 27531867 27535054 Apr1g1779 1 27531867 27535054 ECH
Apr9g2101 9 29138550 29142384 Apr1g1779 1 27531867 27535054 PCT