Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1766 ATGATGCAGCCGGGACCTGGCATGCCTCCACCCAGCATGGGGCAACAACCACCGCAACAGTATCAGCAGCAGCAACAGCAACCCTACGTTATGATGCCGCCGCAAGCTCAGGCGCCACCGCCGCAGTGGGCCGCTTCCTCCGCCCAACATCCGTCGCAGCCCGCCAGCGCCGACGAGGTCCGTACCCTGTGGATCGGTGATTTGCAGTACTGGATGGACGAAAACTATCTATATACTTGTTTTGCTCACACTGGCGAGGTGACGTCTGTTAAAGTGATTAGGAATAAACAAACTAGTCAATCAGAAGGATATGGGTTTATTGAGTTTAATAGTCGTGCTGCAGCTGAGAGAATTCTTCAAACATATAATGGAGCAATTATGCCGAATGGGGGGCAGAGTTTCAGGTTGAATTGGGCAACTTTTAGTGCTGGTGAGAGGCGGCATGATGATACTCCTGATTATACCGTATTTGTTGGTGACTTGGCTGCAGATGTTACTGATTACCTCCTTCAGGAGACATTTAGGGGTCGTTATAACTCGGTGAAGGGTGCTAAAGTTGTGATTGATAGGCTCACTGGCCGTACCAAGGGGTATGGCTTTGTAAGGTTTGGAGATGAAAGTGAGCAAGTGAGGGCTATGTCTGAGATGCAAGGTGTTCTTCTCTCAACAAGACCTATGAGGATTGGACCAGCCACTAACAAAAACCCGACCACTCAACCTAAAGCTTCATATCAGAATCCTCAAGGTGCCCAGAACGAGAATGATCCAAATAACACAACTATTTTTGTTGGCAACTTGGATCCTAATGTCACTGATGATCATCTGAGGCAAGTTTTCAGCCAGTATGGAGAATTAGTTCATGTTAAAATACCAGCTGGCAAGCGATGTGGGTTTGTTCAATTTGCAGACAGGAGCTGTGCTGAAGAGGCTCTACGGATTTTAAATGGGACACTATTGGGTGGACAGAATGTTCGTCTTTCATGGGGCCGTAGTCCTTCAAACAAACAGGCTCAGGCAGATCCAAACCAGTGGAATGGTGCTGGATATTATGGATATGCTCAAGGTTATGAAAATTATGGTTATGCTCCAGCTGGACAGGATCCCAACATGTATGGCAGTTATCCGGGGTATCCGAGTTACCAACCACCTCAGCAACAGCAGCAAATAGGATATAGTTGA 1179 0.475 MMQPGPGMPPPSMGQQPPQQYQQQQQQPYVMMPPQAQAPPPQWAASSAQHPSQPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEVTSVKVIRNKQTSQSEGYGFIEFNSRAAAERILQTYNGAIMPNGGQSFRLNWATFSAGERRHDDTPDYTVFVGDLAADVTDYLLQETFRGRYNSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMSEMQGVLLSTRPMRIGPATNKNPTTQPKASYQNPQGAQNENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADRSCAEEALRILNGTLLGGQNVRLSWGRSPSNKQAQADPNQWNGAGYYGYAQGYENYGYAPAGQDPNMYGSYPGYPSYQPPQQQQQIGYS* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1766 392 Gene3D - 145 239 IPR012677 -
Apr1g1766 392 MobiDBLite consensus disorder prediction 41 55 - -
Apr1g1766 392 Gene3D - 240 340 IPR012677 -
Apr1g1766 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 259 331 IPR000504 GO:0003723
Apr1g1766 392 SUPERFAMILY RNA-binding domain, RBD 244 355 IPR035979 GO:0003676
Apr1g1766 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 233 IPR000504 GO:0003723
Apr1g1766 392 MobiDBLite consensus disorder prediction 228 258 - -
Apr1g1766 392 MobiDBLite consensus disorder prediction 17 32 - -
Apr1g1766 392 MobiDBLite consensus disorder prediction 1 16 - -
Apr1g1766 392 CDD RRM1_SECp43_like 62 142 - -
Apr1g1766 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 141 IPR000504 GO:0003723
Apr1g1766 392 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 19 389 - -
Apr1g1766 392 MobiDBLite consensus disorder prediction 378 392 - -
Apr1g1766 392 MobiDBLite consensus disorder prediction 1 55 - -
Apr1g1766 392 MobiDBLite consensus disorder prediction 372 392 - -
Apr1g1766 392 CDD RRM2_SECp43_like 153 232 - -
Apr1g1766 392 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 225 IPR000504 GO:0003723
Apr1g1766 392 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 261 324 IPR000504 GO:0003723
Apr1g1766 392 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 128 IPR000504 GO:0003723
Apr1g1766 392 CDD RRM3_NGR1_NAM8_like 258 329 - -
Apr1g1766 392 SUPERFAMILY RNA-binding domain, RBD 143 246 IPR035979 GO:0003676
Apr1g1766 392 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 19 389 - -
Apr1g1766 392 SUPERFAMILY RNA-binding domain, RBD 29 142 IPR035979 GO:0003676
Apr1g1766 392 SMART rrm1_1 260 327 IPR000504 GO:0003723
Apr1g1766 392 SMART rrm1_1 155 229 IPR000504 GO:0003723
Apr1g1766 392 SMART rrm1_1 62 137 IPR000504 GO:0003723
Apr1g1766 392 MobiDBLite consensus disorder prediction 223 258 - -
Apr1g1766 392 Gene3D - 10 144 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1766 Apr-Chr1 27330443 27334093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1766 60 338 Eukaryotic Initiation Factors Gene Family AT2G23350 28.421 3.71e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1766 - - aprc:113864230 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2120 9 29383720 29387766 Apr1g1766 1 27330443 27334093 PCT