Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1751 ATGGCAAATTTCACTTCTGTCTCTTCATCATCATCATCATCTTCTTCTTCTTCTTCTACATCTCTGTCACACATTCCACCCATTTCAGCCCCTTTTTCTTCTTCTTCTTCTTCTTCTTCTGCAGCTTTTGATGACTCTGTGGAGGACTCCTGCAGTATATGTCTTGAGCCCTTCAGCATCCATGACCCATCAACTGTTACTTGTTGCAAACATGAATATCATTTGCATTGCATTCTTGAATGGTCACAAAGAAGCAAAGAGTGCCCTATATGTTGGCAATCGCTTGCTTTGAAAGACCCTGCCAGCCAAGAGCTTCTAGCCGCAGTGGAGGATGAAAAACGCATAAGATCAAGAACAATACATTCATCTTCATTCACTAATTCTCGTGTCCCCCTTGAGCGGCTTAGTGATGACCATGATGATTCTTGCTCAGACGACTCTGATTTTGATGAACAAATTATGCGCCGCCTAGTTGCTGCTGCAAGTAGAGCTCGTTTTGTTCAGAGACAAGAAAGGCAGAGATCAACTGGAGCAGGTCCATCAGAGGGTCTTGCCTTTAACTCTTCTGTGCATGTGTCTGGGGTGCAGCCTACATTTCCAACTTCACCATCTGGGGGTAGTTCACTGGCTTCTAGTGCACCTTCTATTTACATTCAACCTCCTGAGCTTGATGTCCCTTACAGACCCAGAGTTCTCTTTAGCCAGTCACCGCCTGAGAGTGAGAGGAGACCGAACACTTCTGAGATGTTTTCCTTTCCCGAGTCCATCAAATCCAAATTTTCTGCTGCTTCAGCCAGATATAAGGAATCAATTTCAAAAAGTACCCGTGGCCTTAAAGAGAAGTTACTTGCCCATAATGTCTCAGTAAAAGAGTTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATTGCTGGAGTTGCGCGAATGATTGAACGCCTTGATCTTACCTCAAAAAGATCCAGTTCTCCTGTCATTCCTGTCTGTTCTGAGGGAACTTCAGGCATCCCTGAAGAAGGGAGGTCTGTTGAAGGGAATGACGTCATGCATTCTCCTATTAAAGAGAGTGAAGGTGCAGTGCAGGATACTAGTTCAGATGTTCCCCCACTTGGTACTAACATGCTATCTGTTCAAATGCAAGCTCCTCCATGTGTTCAGAGTGGACATGATGCTATGAAGACTTAG 1185 0.4473 MANFTSVSSSSSSSSSSSSTSLSHIPPISAPFSSSSSSSSAAFDDSVEDSCSICLEPFSIHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKDPASQELLAAVEDEKRIRSRTIHSSSFTNSRVPLERLSDDHDDSCSDDSDFDEQIMRRLVAAASRARFVQRQERQRSTGAGPSEGLAFNSSVHVSGVQPTFPTSPSGGSSLASSAPSIYIQPPELDVPYRPRVLFSQSPPESERRPNTSEMFSFPESIKSKFSAASARYKESISKSTRGLKEKLLAHNVSVKELSKGVQREMNAGIAGVARMIERLDLTSKRSSSPVIPVCSEGTSGIPEEGRSVEGNDVMHSPIKESEGAVQDTSSDVPPLGTNMLSVQMQAPPCVQSGHDAMKT* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1751 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 123 IPR013083 -
Apr1g1751 394 MobiDBLite consensus disorder prediction 171 185 - -
Apr1g1751 394 MobiDBLite consensus disorder prediction 1 36 - -
Apr1g1751 394 SMART ring_2 51 91 IPR001841 -
Apr1g1751 394 MobiDBLite consensus disorder prediction 322 346 - -
Apr1g1751 394 ProSiteProfiles Zinc finger RING-type profile. 51 91 IPR001841 -
Apr1g1751 394 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 377 - -
Apr1g1751 394 MobiDBLite consensus disorder prediction 166 185 - -
Apr1g1751 394 Pfam Ring finger domain 49 91 IPR001841 -
Apr1g1751 394 Coils Coil 392 394 - -
Apr1g1751 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 377 - -
Apr1g1751 394 SUPERFAMILY RING/U-box 47 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1751 Apr-Chr1 27215905 27219691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1751 45 99 C3H Transcription Factor Family AT4G00335 45.455 1.62e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1751 K19043 - gmx:100805449 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1751 1 27215905 27219691 Apr1g1751 1 27215905 27219691 ECH