Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1744 ATGGAGAAAATTGAGATCAATGACTTTAGAACTCGTAGTTTGCCTTTGGCTAGGATCAAGAAGATCATGAAGGCTGATGAGGATGTGGACATGATATCAGGCGAGGCGCTTGTGGTGGTTGCTAAGGCATGTGAAATGTTCATTATGGAGCTGACAACGAGAGCTTGGGTTAAAGCTGAGGAAAACAGAAGGCTGACACTTCAGAAGAATGACATTAGATATGCAATCTCAAGAACTGATGCGTTTGATTTTCTTGTTGACATTGTCCCTAGGGATGACACTGTGGAGCATGAAATCGTTGCAGGCATACTAAGAGACACTATTCCAATTAACAATGTTCTTTATCCCATGCCACCTCGTCAGCATGTTGCATATGCTCCACATGGGCCCTCAAGAATGGCTATGGGTGGGCCCGTTCTTGATCAGGCCCATTATGGGCTGGACCCCCATCCTTCTACAACTCAAATGCGGCCCAACCCCAAACAACAAGACCATTCTCCTAATTCGGATGATTGA 516 0.4535 MEKIEINDFRTRSLPLARIKKIMKADEDVDMISGEALVVVAKACEMFIMELTTRAWVKAEENRRLTLQKNDIRYAISRTDAFDFLVDIVPRDDTVEHEIVAGILRDTIPINNVLYPMPPRQHVAYAPHGPSRMAMGGPVLDQAHYGLDPHPSTTQMRPNPKQQDHSPNSDD* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1744 171 MobiDBLite consensus disorder prediction 135 171 - -
Apr1g1744 171 SUPERFAMILY Histone-fold 7 85 IPR009072 GO:0046982
Apr1g1744 171 MobiDBLite consensus disorder prediction 148 163 - -
Apr1g1744 171 Gene3D Histone, subunit A 1 91 IPR009072 GO:0046982
Apr1g1744 171 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 6 168 - -
Apr1g1744 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 76 IPR003958 -
Apr1g1744 171 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 6 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1744 Apr-Chr1 27176442 27176972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1744 5 141 CCAAT-HAP5 Transcription Factor Family AT3G48590 56.522 6.16e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Apr1g1744 CBFD_NFYB_HMF 3.4e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1744 K08066 - nnu:104596441 167.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1744 1 27176442 27176972 Apr1g1744 1 27176442 27176972 ECH