Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1736 ATGTCTCATATAGCTGTCGAGAGGAACAGGAGAAGACAGATGAATGAACATCTCAAAGTGTTGAGGTCGTTGACTCCATGTTTCTACATCAAAAGGGGAGACCAAGCATCTATAATAGGGGGAGTTATAGAATTCATCAAGGAGTTACACCAAGTACTTCAGGCTTTGGAGTCCCAGAAAAGAAGAAAGAGTTTAAGCCCTAGCCCTGGCCCGAGCCCAAGAACACTGCAGCCAACATTTCATCAACTCGATAGTTCCTCCTTAATTGGGACTAATTCATTCAAGGAACTAGGAGCAAGCTGCAACTCTTCTGTTGCGGATGTAGAAGTGAAAATATCGGGTTCAAACGTGATTTTGAAAGTGATTTCCCACAGAATTCCGGGTCAAGTTGCAAGGATTATAGCTGTTTTGGAAAGTCTTTCATTTGAAGTCCTTCATCTGAACATCAGTAGCATGGAGGAGACTGTCTTATACCAATTTGTGGTCAAGATAGAGCTGGGATGTCAACTAAGTCTGGAGGAACTAGCGATGGAAGTACAACAAAGCTTCTGCTCAGAGGCTATAACTGTGCTGTGA 576 0.4306 MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLQALESQKRRKSLSPSPGPSPRTLQPTFHQLDSSSLIGTNSFKELGASCNSSVADVEVKISGSNVILKVISHRIPGQVARIIAVLESLSFEVLHLNISSMEETVLYQFVVKIELGCQLSLEELAMEVQQSFCSEAITVL* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1736 191 SMART finulus 4 55 IPR011598 GO:0046983
Apr1g1736 191 Gene3D - 1 64 IPR036638 GO:0046983
Apr1g1736 191 PANTHER TRANSCRIPTION FACTOR MUTE 1 189 - -
Apr1g1736 191 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Apr1g1736 191 PANTHER TRANSCRIPTION FACTOR FAMA 1 189 IPR044283 GO:0003700|GO:0010052
Apr1g1736 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Apr1g1736 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 68 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1736 Apr-Chr1 27091280 27093102 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1736 1 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 65.672 1.04e-86 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr1g1736 HLH 4.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1736 - - gmx:100810771 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1736 1 27091280 27093102 Apr1g1736 1 27091280 27093102 ECH