Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1734 ATGGGTATCTCATGGAGTAGCAGAAGAAGAAACAATTTCATTCAGAACCCACCTCCACCACCCTCATACTATTACCCTCCACAATCTCATCCTCCTCCTCCGCCACCCCCTCCGCCGCAAGGCTACTATTTCCCTTCAACAACCCCTTACACCCCTCACTGCACTAATTATGTTTCTCCCCCTGCTTTGCCCCCTCCTCCACCACCACCACCACCTCAACCTCAGACCCATTCCTTCTATTACTCCAATCCCAATGATTACACCAACTATGCCAATTCTACTGTGAATCGTCTTCATTACCACCCTTTCTATGTGAATCAGCCTCATCCTTCTGGTTGGCCTGCGATTCGTCCTTCTGCTTCTACCCCTCCTCCTTATGTTGACCACCAAACTGCTAAGAAGATCAGAAACTATGTTAATGTCCATAAAGACACCTTGCGTCTTGAGCTTGATGATCACAACCCCGATCATCACCTCCTTTCTTTCGTTTTTGATGCAATCTATGATGGGAGCATTACTATCTTCTACTTTGCCAAGGAAGAAGAAAAATGTAGGTTTGTTCCATTATTTCCTGATGCATTTGAGCCAATCAGAATCCCCTTTCAGAAAGGAGTTGGCCAGAAATTTGCTCAGCCTGCAGGAACAGGGATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCACCTGGAGAGGATGTCTTTCCTCTGGTAATATGTGCTGAAACATGTCCCTCAGCAGATGAAACTCCTGGTGATTCCTTGCAAGATGCATCCCCTCACATGCAAATCACTCAGGGTGTCTTAGAGAAAAGTAACAGTGGTGGTCCTTTCCAGATAAAAGTAGTTAGGCAGATTTTGTGGATTGATGGTGTTCGTTATGAGTTGAGAGAGTTATATGGAATAGGAAGCTCAGCTGCAACAGATTTTGATGACAATGATCCTGGGAAGGAGTGTGTAATATGCATGACTGAACCAAAGGATACTGCAGTGTTACCTTGTCGACATATGTGTATGTGCAGTGAGTGTGCAAAAGCTCTGCGACTTCAATCCAATAAATGTCCTATATGCCGTCAGTCTATTGAGGAACTCATAGAGATCAAGGTGAACAATGCCAATCAATGA 1131 0.4483 MGISWSSRRRNNFIQNPPPPPSYYYPPQSHPPPPPPPPPQGYYFPSTTPYTPHCTNYVSPPALPPPPPPPPPQPQTHSFYYSNPNDYTNYANSTVNRLHYHPFYVNQPHPSGWPAIRPSASTPPPYVDHQTAKKIRNYVNVHKDTLRLELDDHNPDHHLLSFVFDAIYDGSITIFYFAKEEEKCRFVPLFPDAFEPIRIPFQKGVGQKFAQPAGTGIDLGFFELDDLSKPSPGEDVFPLVICAETCPSADETPGDSLQDASPHMQITQGVLEKSNSGGPFQIKVVRQILWIDGVRYELRELYGIGSSAATDFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQSIEELIEIKVNNANQ* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1734 376 MobiDBLite consensus disorder prediction 14 45 - -
Apr1g1734 376 Coils Coil 360 376 - -
Apr1g1734 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 370 IPR013083 -
Apr1g1734 376 SUPERFAMILY RING/U-box 320 366 - -
Apr1g1734 376 PANTHER MAHOGUNIN 1 375 IPR045194 GO:0061630
Apr1g1734 376 SMART ring_2 321 359 IPR001841 -
Apr1g1734 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 1 375 - -
Apr1g1734 376 MobiDBLite consensus disorder prediction 1 80 - -
Apr1g1734 376 Pfam Zinc finger, C3HC4 type (RING finger) 319 365 - -
Apr1g1734 376 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 320 360 IPR045195 -
Apr1g1734 376 ProSiteProfiles Zinc finger RING-type profile. 321 360 IPR001841 -
Apr1g1734 376 MobiDBLite consensus disorder prediction 58 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1734 Apr-Chr1 27043084 27049592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1734 99 376 C3H Transcription Factor Family AT3G06140 59.450 1.14e-113 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1734 - - vra:106775674 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1734 1 27043084 27049592 Apr1g1734 1 27043084 27049592 ECH