Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1728 ATGAAAATCTCAATATCAGCGTGTGCCTGCAAGCAAGAGCTACCCCTAGTAAATTTCCAAAAGGGATTAACGATGGAGGCGTTGTTTAAGCAAAGGAAGGATAAGGTGGTAGTGATAATGGGGGCCACGGGAACCGGCAAGACGAAGTTGGCCATAGACGTGGCAAAACACTTGTATCCAGCGGAGATAGTGAACTCAGATAAAATGCAAGTTTACAAAGGTCTTGACATCACGACCAATAAGGTGAGTGAAGAAGAGTGTGGTGGAGTCCCACATCATCTGCTTGGCACAATTGATCCTAATTTAAATTTCACAGCCAACGAGTTCTGTCGCTACGCTACTTTGGCCATCGATTCCATTGTGGAAAGGGATGGCTTACCCATCATTGCTGGCGGGTCCAACTCTTACATAGACGCGTTGGTGAACCATCACACGCAGTTTAGGCTAAGGTATGAGTGTTGTTTCCTCTGGGTCGACGTGTCCCTCCCAGTGCTTCATTCCTCCCTCCGCACACGTGTGGACCGCATGATCGAAGCTGGCCAAGTCGACGAGGTTCGTCAATTCTTCCAACCTCACGCCGATTACACCAAAGGGATCCGAAGGGCCATTGGGGTCCCCGAATTCGACGATTTTCTCAGAGCAGAGGCTTCTTCCGCCGATGAGAAAACCAAAAAGAAGCTTCTAGAAGCTGCCATTGCTAGGATCAAGGTTAACAACTGCACGCTCGCCAATCGCCAGCTTCAGAAGATTCATCGCTTGCACGGTTTGTGGAAACGGACCATGCACCATCTCGACGCCACCGAGGCGGTCCTCAATAGCGGCTGTGAGGACACGTGGCACCATCACGTCCTCGCCAGGAGTTTAGCAATACTTCACAAGTTTCTTTACGAGGAAACGCATGTTCCCGCCGGAATTATGTCAACCAAAGATGTAATCGCCGCTGTTTCTACGCCGCCGCCGCCGCCCAAGGTAGCAATGGCTGCTACCCATTAG 993 0.5055 MKISISACACKQELPLVNFQKGLTMEALFKQRKDKVVVIMGATGTGKTKLAIDVAKHLYPAEIVNSDKMQVYKGLDITTNKVSEEECGGVPHHLLGTIDPNLNFTANEFCRYATLAIDSIVERDGLPIIAGGSNSYIDALVNHHTQFRLRYECCFLWVDVSLPVLHSSLRTRVDRMIEAGQVDEVRQFFQPHADYTKGIRRAIGVPEFDDFLRAEASSADEKTKKKLLEAAIARIKVNNCTLANRQLQKIHRLHGLWKRTMHHLDATEAVLNSGCEDTWHHHVLARSLAILHKFLYEETHVPAGIMSTKDVIAAVSTPPPPPKVAMAATH* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1728 330 Gene3D - 33 295 IPR027417 -
Apr1g1728 330 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 27 300 IPR039657 -
Apr1g1728 330 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 162 261 - -
Apr1g1728 330 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 27 300 - -
Apr1g1728 330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 197 IPR027417 -
Apr1g1728 330 Pfam IPP transferase 148 248 - -
Apr1g1728 330 Pfam IPP transferase 70 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1728 Apr-Chr1 26979054 26980716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1728 150 299 C2H2 Transcription Factor Family AT2G27760 34.659 3.37e-23 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1728 K10760 - gmx:100812928 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1728 1 26979054 26980716 Apr1g1728 1 26979054 26980716 ECH
Apr9g2150 9 29594170 29595144 Apr1g1728 1 26979054 26980716 PCT