Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1720 ATGTTCTTGTTTTTCCAATCTCAGTTGCTGTGTTCGCCGCTGAACTTTGTTGGGTCTGTTTTGTTGTCATCTGTGGATGTGGACTTCTTTACTGAATATGGTGAAGGAAGCAGGTATAAAATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTTGTTTGCTCTGCATATGATACACATACTGGAGAAAAGGTTGCAATAAAGAAAATCAATGACATATTTGAACATGTTTCTGATGCCACTCGCATTCTTCGTGAGATAAAGCTTCTTAGACTTTTACGTCATCCAGATATTGTGGAGATCAAGCATATTTTGTTACCTCCTTCTAGAAGGGAATTCAAAGATATATATGTTGTTTTTGAGCTCATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGATTTGACGCCAGAGCATTACCAATTTTTCCTCTACCAGCTTCTTCGAGGCTTGAAGTATATACACACAGCAAATGTTTTTCACCGTGATCTAAAACCAAAAAACATTTTAGCAAATGCTGACTGCAAACTGAAGATTTGCGACTTTGGTCTTGCCAGAGTGGCTTTTAATGATACACCCACTGCTATATTCTGGACTGATTATGTTGCAACACGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCTTTTTTTCCAAGTATACACCAGCTATAGACATATGGAGTATTGGCTGCATTTTTGCTGAACTTTTGACTGGAAAACCCCTTTTCCCTGGGAAGAATGTTGTCCATCAACTGGACCTCATGACTGATCTTCTGGGAACACCATCTCCTGAATCTGTTGCTAGGGTACGAAATGAAAAAGCTCGGAGATACTTAAGCAGTATGCGTAAGAAGAAGCCAGTTCCTTTCTCACAGAAATTTCCTAATGCAGATCCCCTTGCTCTACGTTTGTTAGAAAGAATGTTGGCATTTGAGCCTAAGGATCGGCCTACTGCTGAAGAGGCTCTAGCGGATCCATATTTTAAAGGCTTGGCCAAGGTTGAGAGGGAACCTTCCGCTCAGCCAGTTACCAAGATGGAGTTTGAATTTGAGAGACGCAGAATAACGAAGGAAGACGTAAGAGAGCTTATATACCGAGAGATTCTGGAGTACCATCCAAAAATGTTAAAGGAATTTCTAGAGGGAGCTGAGCCAACAGGTTTCATGTATCCAAGTGCTGTGGACCACTTCAAGAAGCAATTTGCATATCTAGAGGAGCATTATGGCAAAGGGGGTACTGTTGCTCCACCTGAGAGGCAACATGCATCATTACCTAGACCATGTGTGTTGTATTCAGATAACTCAGTACAGAGCACAGCTGAGGTTGCAGATGATTTATCCAAATGTTGTCTCAAAGAAGTTGAGAAACCACCCATAGATAGGAGTAGTGCCATCCCTATGACACGGCTTCCCTTACAAGCTCCTCAAAATATTCAAGGCGTTGCTGCAAGGCCCGGAAAAGTTGTTGGTTCAGTAATGCGTTACAACAATTGCGGGGTGGCAGTGACGGCAGAGTCTGAACAGCGGAGAGTGGTTAGGAACCCATCAGCTTCAGCTCAGTATGCTGCTTCAAGCTGTTCATATCCTCGGAGAAATCAGAACTATAAAAATGAAAGGGCAGAGGATGATGGGATTGAAGGTTCTAATGGGCTGCAGCCAAAGCCTCAATACATGGCAAGAAAAGTTGCTGCTGCTCAAGGTGGAGCTGGTGGTCAATGGTATTGA 1731 0.4263 MFLFFQSQLLCSPLNFVGSVLLSSVDVDFFTEYGEGSRYKIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDLLGTPSPESVARVRNEKARRYLSSMRKKKPVPFSQKFPNADPLALRLLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEFLEGAEPTGFMYPSAVDHFKKQFAYLEEHYGKGGTVAPPERQHASLPRPCVLYSDNSVQSTAEVADDLSKCCLKEVEKPPIDRSSAIPMTRLPLQAPQNIQGVAARPGKVVGSVMRYNNCGVAVTAESEQRRVVRNPSASAQYAASSCSYPRRNQNYKNERAEDDGIEGSNGLQPKPQYMARKVAAAQGGAGGQWY* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1720 576 Pfam Protein kinase domain 39 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1720 576 Gene3D Transferase(Phosphotransferase) domain 1 125 353 - -
Apr1g1720 576 Gene3D Phosphorylase Kinase; domain 1 54 375 - -
Apr1g1720 576 ProSiteProfiles Protein kinase domain profile. 39 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1720 576 CDD STKc_TDY_MAPK 38 375 - -
Apr1g1720 576 SUPERFAMILY Protein kinase-like (PK-like) 36 334 IPR011009 -
Apr1g1720 576 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524
Apr1g1720 576 ProSitePatterns MAP kinase signature. 74 177 IPR003527 GO:0004707|GO:0005524|GO:0006468
Apr1g1720 576 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 23 492 - -
Apr1g1720 576 SMART serkin_6 39 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1720 576 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 23 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1720 Apr-Chr1 26868958 26875629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1720 23 576 MAP Kinase Gene Family AT5G19010 80.389 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Apr1g1720 Pkinase 3.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1720 - K04371 gmx:100814013 1038.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1720 1 26868958 26875629 Apr1g1720 1 26868958 26875629 ECH
Apr9g2164 9 29682382 29688971 Apr1g1720 1 26868958 26875629 PCT