Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1717 ATGGCTTCCATTGCTTTCAGAAACCCAAATTCTAAGCGTCTTCTCTGTTTGCATTTCGTATCTGCTTACCATTCAGTATCTCGTGGAATTTGCACCATATCCCAAAACTGCAATGCACCTTCATTGGATCTTGTTTCTCTACGGAGATCCATGGCCACTTTCACTCGAACAAAGCCCCATCTTAACGTGGGCACAATTGGGCATGTTGATCATGGGAAAACCACATTAACTGCAGCAATTACCAAGGTGCTATCTGAAGAAGGTAAAGCCAAGGCCATTGCCTTTGAGGAAATAGACAAGGCTCCTGAGGAGAAAAAGAGAGGAATTACAATTGCTACAGCTCATGTAGAGTATGAGACAGCAAAGAGGCACTATGCCCATGTTGATTGCCCTGGACATGCAGACTATGTTAAGAACATGATAACTGGAGCTGCACAAATGGATGGCGGAATTCTTGTGGTTTCTGCTCCTGATGGGCCAATGCCTCAAACAAAGGAACATATACTTCTTGCTCGTCAGGTTGGTGTGCCATCACTGGTCTGTTTTCTGAATAAGGTTGATGCTGTAGATGACCCAGAGTTATTGGAACTTGTGGAAATGGAGCTTCGGGAACTTCTTAATTTCTACAAATTTCCTGGGGATGAGATCCCAATTGTACGAGGTTCAGCCCTGTCTGCATTGCAAGGGACTAATGAAGAACTTGGAAAGAAGGCTATCTTAAAACTAATGGATACTGTGGATGAATACATTTCTGATCCTGTGCGGCAGCTGGACAAGCCTTTCTTAATGCCAATAGAAGATGTTTTCTCTATTCAGGGGCGTGGAACTGTTGTGACTGGTCGTGTTGAACAAGGTACCATCAAAGTAGGCGAGGAGGTTGAAGTATTGGGACTAACACAGGCTGGACCTTTGAAGACTACAGTAACTGGTGTGGAAATGTTCAAGAAAATTTTGGATCGAGGGGAAGCTGGTGATAATGTAGGACTTCTTCTACGTGGTCTTAAGCGTGATGATGTACAACGGGGAATGGTTGTCACCAAGCCTGGTGCGTTTAAAACGTATAAGAAGTTTGAAGCAGAGATTTATGTCCTCTCAAAAGATGAAGGTGGCCGTCACACTGCTTTTTTCTCTAATTATAAGCCTCAGTTTTACATGAGGACTGCAGATGTTACTGGAAAGGTAGAATTACCTGAAAATGTTAAGATGGTTATGCCTGGTGACAATGTCACAGCAACTTTCGAGCTGATCTCACCTGTTCCTCTTGAAACGGGACAAAGATTTGCTTTGAGAGAAGGAGGCAGAACAGTTGGTGCAGGAGTGGTCTCCAAAGTGATTGCCTAG 1341 0.4385 MASIAFRNPNSKRLLCLHFVSAYHSVSRGICTISQNCNAPSLDLVSLRRSMATFTRTKPHLNVGTIGHVDHGKTTLTAAITKVLSEEGKAKAIAFEEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLNFYKFPGDEIPIVRGSALSALQGTNEELGKKAILKLMDTVDEYISDPVRQLDKPFLMPIEDVFSIQGRGTVVTGRVEQGTIKVGEEVEVLGLTQAGPLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKRDDVQRGMVVTKPGAFKTYKKFEAEIYVLSKDEGGRHTAFFSNYKPQFYMRTADVTGKVELPENVKMVMPGDNVTATFELISPVPLETGQRFALREGGRTVGAGVVSKVIA* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1717 446 Gene3D Translation factors 390 445 - -
Apr1g1717 446 PANTHER ELONGATION FACTOR TU 35 445 - -
Apr1g1717 446 SUPERFAMILY Translation proteins 255 350 IPR009000 -
Apr1g1717 446 Pfam Elongation factor Tu GTP binding domain 58 250 IPR000795 GO:0003924|GO:0005525
Apr1g1717 446 TIGRFAM small_GTP: small GTP-binding protein domain 62 199 IPR005225 GO:0005525
Apr1g1717 446 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 58 254 IPR000795 GO:0003924|GO:0005525
Apr1g1717 446 Pfam Elongation factor Tu C-terminal domain 352 444 IPR004160 -
Apr1g1717 446 PRINTS GTP-binding elongation factor signature 62 75 IPR000795 GO:0003924|GO:0005525
Apr1g1717 446 PRINTS GTP-binding elongation factor signature 106 114 IPR000795 GO:0003924|GO:0005525
Apr1g1717 446 PRINTS GTP-binding elongation factor signature 126 136 IPR000795 GO:0003924|GO:0005525
Apr1g1717 446 PRINTS GTP-binding elongation factor signature 142 153 IPR000795 GO:0003924|GO:0005525
Apr1g1717 446 PRINTS GTP-binding elongation factor signature 179 188 IPR000795 GO:0003924|GO:0005525
Apr1g1717 446 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 355 446 IPR009001 -
Apr1g1717 446 CDD EF_Tu 59 253 IPR041709 -
Apr1g1717 446 Gene3D - 50 253 IPR027417 -
Apr1g1717 446 CDD EFTU_II 261 349 IPR033720 -
Apr1g1717 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 276 IPR027417 -
Apr1g1717 446 Hamap Elongation factor Tu [tuf]. 49 446 IPR004541 GO:0003746|GO:0005525|GO:0006414
Apr1g1717 446 Gene3D Translation factors 256 386 - -
Apr1g1717 446 PANTHER ELONGATION FACTOR TU-RELATED 35 445 - -
Apr1g1717 446 Pfam Elongation factor Tu domain 2 275 346 IPR004161 GO:0005525
Apr1g1717 446 CDD EFTU_III 352 441 - -
Apr1g1717 446 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 99 114 IPR031157 -
Apr1g1717 446 TIGRFAM EF-Tu: translation elongation factor Tu 50 445 IPR004541 GO:0003746|GO:0005525|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1717 Apr-Chr1 26853833 26857777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1717 56 444 Eukaryotic Initiation Factors Gene Family AT5G60390 30.115 1.13e-44 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1717 K02358 - gmx:102667962 805.053