Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1710 ATGATTGTCAAGGAGCATTCTGTTGGTACTGAGCTGGCAATGAATAATGCTAATAGGGAGGAGGAAATAGATTTTTCTTGTGAACCGTACATAGGGTTAGAATTTGATTCTGCAGATGATGCCCTTAAACTTTACACTTCTTATGCAAATCGAACGGGATTTAAAGTTCGGATTGGTCAGCTCTATCGATCAAGAACTGATGGGTCGGTTTCTTCTCGAAGATTCGTGTGCTCAAAGGAGGGATATCAGCTCAGTTCAAGAACAGGCTGTCCAGCATTCATAAGAGTACAAATAAATGGTTCTGGAAAATGGGTCATTGATCATTTTCATAAGGATCATAATCACAATCTTGAAATCAATGGTGAGAGTTGCATTCCAACATTGGAACAGAAGGGTGCTACAGCTATCAATTCTCTTACTGAATTTCCTCGCAGGCCAAGAAAGAAATTGCTTGAAGAAGCCACTGATGAACCCTCTTGTCCCTTTGGCATTATTAATTTCAAGCGTCTGAGAAAGGAAGAACATCAAGGACAGTCCAGGGTTGAACCATATGTGGGTCAAGAGTTCAATTCACCTAATGAAGCCTACCAATTTTATCATGCATATGCAGCGAATTTGGGTTTTGGAGTTCGAATTGGTCAATTGTTTCGTTCTAAGAATGATGGATTGATCACATCCCGCAGATTTGTGTGCTCCAAAGAGGGGTTCCAGCACCCTTCAAGAGTAGGTTGTGGGGCTTATTTAAGGATTAAGAAACAGCCATCAGGAAAGTGGGTGGTGGACCGCCTCCGGAAAGATCATAACCATGATATGGACTCTGGAAAGGAAGGTAGGGCAAAAAGTCTTCCTGCTTCTAATATTTTGACTGATGAGGTAGATACTGGATTGGTAAATGGTGATTTATTTAGAATAGATAACTACCCTGTTCCTAGAGGTGGTAGACAAAATCACATTAGAAGTGATTGGTACAGCATGCTTTTAGAGTATTTTCAATCAAAACAAGCAGAAGATACTGGATTCTTTTATGCTGTGGAAGTTGATAATGGTAGTTGTATGAGCATATTTTGGGCTGATGGCCGATCTAGATATTCATGTAGTCAGTTTGGTGATGTTCTAGTGGTAGACACGTCATACCGAAAAACTGTCTATTTGGTACCATTTGCTACTTTTGTTGGAGTCAACCATCATAAGCAACCTGTGCTTCTTGGTTGTGCTCTAATTGCTGATGAATCTGAAGAATCTTTCACTTGGTTGTTTCGGACATGGCTTAGGGCAACGTCAGGCCGGCAGCCTCTGACAATTGTAGCTGATCAAGACATTGCAATCCAGAGGGCAATAGCGAAAGTCTTTCCAGTAACCCATCATCGCTTTTCATTGTGGCAAATCAAGGTAAAGGAACAAGAGAACATGGGTCTGATAGGTCATGGATTTACAGAAGATTACGAAAAGTGTGTTTACCAGAGTCAGACCCTTGATGAATTTGACACCACATGGAATGCCCTACTCAACAAATATGGATTGAAGGACAATGCCTGGCTAAAAGAAATGTATGAGAAGCGTGCATCCTGGGTTCCATTATATTTGAAGGGCACTTTTTTCGCTGGCATTCCCATTAATGAAAGCCTGGATTCATTCTTTGGTGCTCTTTTAAATGCCCAGACACCTCTCGTGGAGTTCATTCCTAGGTATGAAAGAGGTCTTGAGCGACACCGTGAGGAGGAAAGAAAAGAGGATTTCAATACTTCTAATTTTCAACCCATTTTGCAAACAAAAGAACCTGTGGAAGAACAATGTAGAAGGCTTTACACTCTCGCAATATTCAAAGTATTTCAAAAAGAACTATTGCAGTGCTATAGCTATCTTGGGTTCAAAATATTTGAGGAAGGGGGCCTGAGCAGATATTTGGTGCGTAGGTGTGGCAATGATATGGAGAAGCATGTAGTTACATTTAATGCACCCAATCTCAGCGCTAGTTGTAGCTGTCAGATGTTTGAATATGAAGGTGTTCTTTGTAGACATGTCTTGAGGGTTTTCCAGATATTGGAATTAAGAGAAGTTCCTTCACGCTACATCCTACACCGATGGACGAGAAATGCTGAGGATGGTGTTTTTCCTGACATAGAATCATGGAGTAGCTCTCAGGAACTAAAAAATTTGATGCTTTGGAGTCTGAGAGAAACCGCTTCTAAATACATAGATGCTGGTGCAACATCCATTGAAAAGTACAAACTTGCCTATGAAATTTTGCGAGAGGGTGGGAGAAAGCTATGTTGGCACAGGTGA 2283 0.4104 MIVKEHSVGTELAMNNANREEEIDFSCEPYIGLEFDSADDALKLYTSYANRTGFKVRIGQLYRSRTDGSVSSRRFVCSKEGYQLSSRTGCPAFIRVQINGSGKWVIDHFHKDHNHNLEINGESCIPTLEQKGATAINSLTEFPRRPRKKLLEEATDEPSCPFGIINFKRLRKEEHQGQSRVEPYVGQEFNSPNEAYQFYHAYAANLGFGVRIGQLFRSKNDGLITSRRFVCSKEGFQHPSRVGCGAYLRIKKQPSGKWVVDRLRKDHNHDMDSGKEGRAKSLPASNILTDEVDTGLVNGDLFRIDNYPVPRGGRQNHIRSDWYSMLLEYFQSKQAEDTGFFYAVEVDNGSCMSIFWADGRSRYSCSQFGDVLVVDTSYRKTVYLVPFATFVGVNHHKQPVLLGCALIADESEESFTWLFRTWLRATSGRQPLTIVADQDIAIQRAIAKVFPVTHHRFSLWQIKVKEQENMGLIGHGFTEDYEKCVYQSQTLDEFDTTWNALLNKYGLKDNAWLKEMYEKRASWVPLYLKGTFFAGIPINESLDSFFGALLNAQTPLVEFIPRYERGLERHREEERKEDFNTSNFQPILQTKEPVEEQCRRLYTLAIFKVFQKELLQCYSYLGFKIFEEGGLSRYLVRRCGNDMEKHVVTFNAPNLSASCSCQMFEYEGVLCRHVLRVFQILELREVPSRYILHRWTRNAEDGVFPDIESWSSSQELKNLMLWSLRETASKYIDAGATSIEKYKLAYEILREGGRKLCWHR* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1710 760 Pfam SWIM zinc finger 655 679 IPR007527 GO:0008270
Apr1g1710 760 SMART 26again6 657 684 IPR006564 GO:0008270
Apr1g1710 760 Pfam FAR1 DNA-binding domain 197 271 IPR004330 -
Apr1g1710 760 Pfam FAR1 DNA-binding domain 44 117 IPR004330 -
Apr1g1710 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 146 756 - -
Apr1g1710 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 19 121 - -
Apr1g1710 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 19 121 IPR031052 GO:0006355
Apr1g1710 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 146 756 IPR031052 GO:0006355
Apr1g1710 760 Pfam MULE transposase domain 371 463 IPR018289 -
Apr1g1710 760 ProSiteProfiles Zinc finger SWIM-type profile. 646 682 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1710 Apr-Chr1 26777386 26780742 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Apr1g1710 MULE 1.4e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1710 - - gmx:100816656 1407.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1710 1 26777386 26780742 Apr1g1710 1 26777386 26780742 ECH