Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1687 ATGGAACCGCAATCTTTCACTCCTCCTCCACACATGGAATCCGAAGACCCTTCCTCCATTTGGGACCTCTCTTACCTCCTCGACTTCAATCTCGACGACGACAACTCTCTCCCCTTAAACGACCTTCAACCTCCCCATCTCCAAACCCCCGCAAACGACAAGGTCCGTAAACGCGACCCCAGACTCACCTGCTCCAACTTCCTCGCGGGTCGGGTCCCCTGCGCATGCCCCGAACTCGACGCCAAGCTCGAAGACGACGGTTTACCCGGGAAGAAACGCCCTCGTACCGCGCGTGCATCCACATCCGCTAGCTGCCAGGTTCCTGGCTGTGAGGTCGATATCTCCGAGCTCAAAGGCTATCACCGGAGGCATAGGGTTTGTTTGCACTGCGCTAATGCCTCCACCGTTCTCCTGCACGGTGAAGCTAAACGATACTGTCAACAGTGTGGCAAGTTTCACGTTTTATCGGATTTTGACGAAGGAAAACGCAGCTGCAGAAGAAAATTAGAGCGCCACAACACCAGAAGGCGAAGAAAGCCTCCGCCGTCGGATTCTACAGCTGCAGCTGATCATGATCTTCAACCTGTTAATCAAAATGAGGATTGCAATTATGATGGAGACGCAGGAAAAGGTTTATATTGTTCTAATTTGAGTAGCGAGATTAATGAAAAAGAAGCGTCCCCATATCAGGAAGACGAGCTGGTTCCCATTCCGAGTTCGGCTCCTGATACACAGAATATTAATAGTGATAGTGTTGTGTCTTTAACTGCTTCTGGTGAAACTCGGGTGAATAGTGGAAAGGATGTTTCCAACACTTCTAATTCGCCTTCATATTGTGACAATAAGAGTGCCTATTCGTCTATGTGCCAAACAGGTCGGATTTCTTTCAAGCTTTATGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGACACCAAATATTCCAATGGTTGGCAAATATGCCTTTAGAGCTGGAGGGATATATCCGCCCTGGGTGTACGATCCTGACAATTTTTATTGCAATGCCTAACATTATGTGGATAAATTTACTCAAAGACTCTTTGGAATATGCGAGAGATCTTGTTGCTCCTGGAAAGATGCTATATGGAAGAGGCACTGCACTAATTCATCTGAATGACATGATCTTCCGTGTTATGAAAGACGGAACTTCTGTGACAAAAGTCGAGGTAAACATGCAGGCACCAAGGCTTCACTATGTTCATCCCACATACTTTGAGGCTGGAAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACCTACTGCAGCCTAAGTTTCGGTTTCTTGTATCTTTTTCTGGAAAGTATCTTAAGTGTCAGCATTGTGTTCCATCTCCACATAACTGGACTGAAGACAATATTTCTTGTGCTTTTGACAGTCAGTTATACAAGATATATGTCCCTCATACAGAGGAAAGTCTCTTTGGTCCTGCTTTTATTGAGGTGGAGAATGAATCTGGTTTATCAAACTTTATTCCTGTACTCATTGGTGATAAAGAAATTTGTACTGAAATGAAGACATTGCAGCAAAAATTAGATATATCCCTCCTTTCTAGACAATTCCAGTCTGCCTCAGGTGGTTCTATCTGCAGCTCATGTGAAGATTTTGCACTTAGGCATGCATCATCGTCAGACTTGCTTGTAGATATAGCATGGTTGCTTAAGGACCCTACTTCAGAAACTTTTGACAGACTGATGACAGCTTCACAAATTCATAGATATTGTCATTTGTTGGATTTTCTGATGTGCAATGATTCATCAGTCATTTTGGGAAAAATATTACCAAATTTGATATTCTTGACAGAAAGCATGAAATCCAATATTGTGATTAATAGGATGGGTGATGTTGACATGACGCCCCTCCTGAAATGCATACATAATGCTAGAGATGCCATTTATCAGAATCATCTGAAAGGTGGAGATATAGGTGTGCACTCTGAAATGGAAGCCTTTAAACTTGCTCAGGGCTGCTCCAAAAATGACATGCTATCAGTTGTTGCAGTTACCACTCAGGATGTCCTGTCGAGAGCAGATGCAAGATTAGGAATACTGAAAAGTCCAACTTCTAATGAGAAAAATGAAAGAATACCACTTTTGAAGAGGGAAATTATAATGAATGTGGAAGAGTTACCTGTAAGATGTGGTCGTCGAAATCTTGCTAGGGGATTCTTGACCTCTCGACCAGCTGTTTTTGTGATTGTTTCAGTTGCGGTTTGTCTTGGGGTATGTGTAGCCGTCCTTCATCATGGGAGGGTTAGTGAGTTAGCAGTATCCATTAGAAGGTGTTTGTTTAACTATTAA 2319 0.4347 MEPQSFTPPPHMESEDPSSIWDLSYLLDFNLDDDNSLPLNDLQPPHLQTPANDKVRKRDPRLTCSNFLAGRVPCACPELDAKLEDDGLPGKKRPRTARASTSASCQVPGCEVDISELKGYHRRHRVCLHCANASTVLLHGEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKPPPSDSTAAADHDLQPVNQNEDCNYDGDAGKGLYCSNLSSEINEKEASPYQEDELVPIPSSAPDTQNINSDSVVSLTASGETRVNSGKDVSNTSNSPSYCDNKSAYSSMCQTGRISFKLYDWNPAEFPRRLRHQIFQWLANMPLELEGYIRPGCTILTIFIAMPNIMWINLLKDSLEYARDLVAPGKMLYGRGTALIHLNDMIFRVMKDGTSVTKVEVNMQAPRLHYVHPTYFEAGKPMEFVACGSNLLQPKFRFLVSFSGKYLKCQHCVPSPHNWTEDNISCAFDSQLYKIYVPHTEESLFGPAFIEVENESGLSNFIPVLIGDKEICTEMKTLQQKLDISLLSRQFQSASGGSICSSCEDFALRHASSSDLLVDIAWLLKDPTSETFDRLMTASQIHRYCHLLDFLMCNDSSVILGKILPNLIFLTESMKSNIVINRMGDVDMTPLLKCIHNARDAIYQNHLKGGDIGVHSEMEAFKLAQGCSKNDMLSVVAVTTQDVLSRADARLGILKSPTSNEKNERIPLLKREIIMNVEELPVRCGRRNLARGFLTSRPAVFVIVSVAVCLGVCVAVLHHGRVSELAVSIRRCLFNY* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1687 772 Pfam SBP domain 105 179 IPR004333 GO:0003677
Apr1g1687 772 Gene3D - 96 166 IPR036893 GO:0003677|GO:0005634
Apr1g1687 772 SUPERFAMILY SBT domain 104 181 IPR036893 GO:0003677|GO:0005634
Apr1g1687 772 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 770 IPR044817 GO:0003677
Apr1g1687 772 MobiDBLite consensus disorder prediction 169 201 - -
Apr1g1687 772 ProSiteProfiles Zinc finger SBP-type profile. 102 179 IPR004333 GO:0003677
Apr1g1687 772 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 16 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1687 Apr-Chr1 26557732 26564715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1687 9 766 SBP-box Gene Family AT5G18830 47.302 0.0 678
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Apr1g1687 SBP 1.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1687 - - aprc:113863838 1499.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1687 1 26557732 26564715 Apr1g1687 1 26557732 26564715 ECH