Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1685 ATGCAAGCACCTCAGCCATCACCCACTGATCAAGCTCCCGAGATTTCCCATCAGGCTGTCCCCCAGAGAAACAAAGAAGTTTCAGATAGTGGACCCAGTGGGAGGCGTCCTGATATTTCACTTCAAGTTCCACCTAGACCTTTAGGGTTTGGCAGCACTAGTGGTGGAAGGGTTCTGGACCATTCTCAAAGTTTCTCTAAAGGGATCTCATCATCAAGAGGCTTCTTGCGGGCCTTGAGCTTCAAAAGAAAAGGAAATGTAGCAGATGGCGAAAGAAGCTCCCTCCTTAATTCAGACCCCAAGACAGCTGCAGACGGTTCTAATATGGCCTCCATATCTGAAATTGCATGGAAAAGATGTGCTTCTCTTCCTGTTACTCCTGCATCAAATCTATCCCCCTCAGTGTCTACACCCATTTCTGCAAGGACATATAATGAACAGACTAAGCCACATAAAGATGTTGTACGTTCTAAGGTGTCAAGGTCCCTTTCTGTACCTGGACGAAATATTGTTATTGTAAGATCAGTCTCCTTTTCTACCCGTAGTGAACAGGAACAACAAGATTCAAATGATGATCAAATAACTCCTGCACCAGTAGAAGTTGCTACTGATGAAGAAATTCCTGAAGAGGAAGCGGTATGCAGGATTTGTCTTGATGTGTGTGATGAAAGGAATACTTTTAAAATGGAATGCAGCTGCAAAGGTGACCTGAGATTGGTCCATGAAGAATGTGCAATCAAATGGTTTAGCACAAAAGGAAATAAGAAATGTGATGTATGTGGGAAAGAGGTTCAGAATTTACCTGTAACTTTGCTTCGAGTGACCAGCTCCATTCAACGACAAAGCAGACAATTACAAGGTCAGCAGAACCTACATCCAGAGACAATAAGTGCCTGGCAAGACTTTGTGGTGCTTGTCCTCATAAGCACAATATGCTACTTTTTCTTCCTTGAACAGCTATTGCTTCCTGAGTTGAAGACTCAAGCCATTATAATAGCAGCACCGTTTGCCTTTACCTTGGGCCTCCTGGCTTCTATTTTTGCTGTCATCCTTGCAATTAAAGAGTATATATGGACATATGCTGCTCTTGAGTTTGCTCTTGTGGCTATAACTGTGCATCTGTTTTATACTATGTTGCATTTGACAGCCATTTACGCAATACTACTTTCTTCAGTTTTGGGTTTTGGAATTGCAATGGGTATCAACTACGCATATATCCAGTTTGTCACTTGGAGACTTCAGGTCTCACATAATGATGACCCAGTATGA 1269 0.4263 MQAPQPSPTDQAPEISHQAVPQRNKEVSDSGPSGRRPDISLQVPPRPLGFGSTSGGRVLDHSQSFSKGISSSRGFLRALSFKRKGNVADGERSSLLNSDPKTAADGSNMASISEIAWKRCASLPVTPASNLSPSVSTPISARTYNEQTKPHKDVVRSKVSRSLSVPGRNIVIVRSVSFSTRSEQEQQDSNDDQITPAPVEVATDEEIPEEEAVCRICLDVCDERNTFKMECSCKGDLRLVHEECAIKWFSTKGNKKCDVCGKEVQNLPVTLLRVTSSIQRQSRQLQGQQNLHPETISAWQDFVVLVLISTICYFFFLEQLLLPELKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVAITVHLFYTMLHLTAIYAILLSSVLGFGIAMGINYAYIQFVTWRLQVSHNDDPV* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1685 422 ProSiteProfiles Zinc finger RING-CH-type profile. 206 267 IPR011016 GO:0008270
Apr1g1685 422 PANTHER OS02G0165000 PROTEIN 2 422 - -
Apr1g1685 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 268 IPR013083 -
Apr1g1685 422 MobiDBLite consensus disorder prediction 1 68 - -
Apr1g1685 422 SMART ringv_2 213 261 IPR011016 GO:0008270
Apr1g1685 422 MobiDBLite consensus disorder prediction 87 106 - -
Apr1g1685 422 Pfam RING-variant domain 214 260 IPR011016 GO:0008270
Apr1g1685 422 PANTHER ZINC FINGER PROTEIN 2 422 - -
Apr1g1685 422 SUPERFAMILY RING/U-box 210 264 - -
Apr1g1685 422 MobiDBLite consensus disorder prediction 1 28 - -
Apr1g1685 422 MobiDBLite consensus disorder prediction 91 106 - -
Apr1g1685 422 CDD RING_CH-C4HC3_MARCH 214 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1685 Apr-Chr1 26514516 26519804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1685 227 322 C3H Transcription Factor Family AT5G59000 30.208 4.11e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1685 - - gmx:100527094 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1685 1 26514516 26519804 Apr1g1685 1 26514516 26519804 ECH