Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1682 ATGGAGTGCAATAAGGAAGAGGCCTTAAGGGCCAAGGACATTGCTGAAAAGAAATTGGAAAACAAGGATTTCAGAATGGCTCGTAAATTTGCGCTTAAGGCTCAACAGCTATATCCTGATTTGGAGAATATCACTCAAATGCTCATTGTTTGTGATGTGCATTGCTCTGCTGAGCTGAAATTGTTTGGCAATGAGATGGACTGGTATAAAATTCTTCAAATTGAGCTGACAGCTAATGATGCAACAATTAAGAAGCAATACAGGAAGTTGGCTCTCCAACTTCATCCTGATAAAAACAAATTTTCTGGTGCAGAAGCTGCATTTAAGTTGATTGGGGAAGCTCAAAGAGTTCTTTTGGATAAAGAAAAGCGATCTAGGCTTGACATGAATTTGCGCAGGGTTCCAAGGAACAGAACTGCTATGTCATCTAATCATCAGCAGAATGTTCAGATGAATTTTAATCCTGTGATGCAAACAAATGTCAGGCCCAATTTTACAAATTTAAATCCTCAACAGCAACAACAGTCTCGGCAAGCATCTCAGCAGGGCCTTAATGGTGGCCACCCTACTTTTTGGACTGTTTGCTCATTTTGTTCTGCTAAATATGAGTACTATAGGGATGTTTTAAATAGAGTTCTTCGTTGTCAACATTGCAATAGGCCCTTCATTGCATATGATGTGAATGTGCAAGGTACAACACCAGCAGTTAATTTAAGTCAGCAAGCTTTCGGTGCACAGAACGATAGTCAAAATCATGGCGCTTTCAAGGTTGGTGTTGGATCTCAAAGTAATTTACATACTCACAGGTCCAATAAAGAATCACATATGAAAGGAGGCCGTACTGCTGATGTCTCTGTAAAGCCAAATGGAAAGAGGAAGAGGAAGCAGGTAGCAGAATCCAGTGAAAGTTCCGAATCTATATGCAGCACTGATTCTGAAGAGGATATGCTTTCTGAAAAGGATATGCTTTCTGAAAAAAATGGTTTTCCTGGTGTTTCTAGTTATAGAGAAGAGCGTCCTCGTAGATCTACGCGGCAAAAGCATCAGGTTTCCTACAAGGAGAATTTGAGTGACGATGATGATGAAGGGTCTGGATCTCCGGTCGGTGTTGGTGAAAATCATGGGGAGGCAGCTAAAATGAATGAGCAGAATAGTTTGGCTACTGATCTGAAAGGTGATCAGGAAAAGGTAAAGCAGAAGCAGAAGTTTTATTCTGAAGAGAGCTTACAAAATGTAAATAAGGAAACTAAGGAGGTTAGAGGAAAAGAAGCAGAGGGCAGCTCAAAGATAGATGAAGCTTCAGAGGATTCAACCTTCAAATCAACAAATCATCCAGATTATTTTGTTTATCCTGATCCAGAGTTCAGTGACTTTGACAAGGACAAGAAAGAGGAGTGTTTTACTGCTGGGCAGATTTGGGCTATTTATGACACTGTAGATGGCATGCCTAGATTCTATGCTTTAATCAGAAAAGTTCTCTCTCCTGGATTCAAGTTGCGGATAACATGGTTTGAACCAGATCCTGATGACTATGATGAAATCAAGTGGTTCGGTGAGAGTCTGCCAGTTGCATGTGGGAAACATAAACTTGGTGGCACTGAAACCACTGAAAATCGTCTGATGTTCTCTCATCTGATTTCTTGTGAAAAGAGTGGCCGCAGTTTTTATAAAGTATATCCTAGAAAGGGAGAAACTTGGGCTCTTCTTAAAAATTGGGATATCAAATGGCATATGGATGCGGAATCTCATCGGCAGTATGATTTTGAGTTTGCTGAAATCTTGTCAGATTATGTTGAAGGTGTGGGAGTAGTTGTTGCATACTTAGCTAAGTTGAAAGGTTTTGTGAGTCTCTTTTCTCGAATTGAGGGAGGCAATCGCACATCTCAAATTTTACCAGTTGAGTTATTCAGATTCTCTCATAGGGTTCCATCTTTTAAAATGACTGGTCAGGAAAGAGTGGGTGTTCCTGTAGGATCTTATGAACTTGATCCTGTATCCTTGCCAATGAATCTTGAAGAGATTGCTGTTGCTGAAGATTTGGAAGTAAAGGTTGGTCATTGTCCGACGGTCGGGATGAGCACAAGGTCGTCACAAAAGTCGGAATTCATCATAAATTTGGAGGGAGATGCATCTACTGCAAAGGTTAATTTGCAAAGAAGCAACTCAGCAGAGGAGAAAAAGGATCCTGTTGATAATGGTAGTGCTCCTTCAGCTTCAGCCACAGAAGCATTTGAAATTCCAGATCCTGTGTTCTGCAATTTTGATGCTGCAAGATCCATTGAAAACTTTAAGATTAATCAAATATGGGCATTTTACAGTGATGAGGATGGACTGCCAAAATACTATGGTCAGATTGAGTGTGTTCTGACAAGCGAAACAGATGTCCAGTTGCAAGTTACGTATCTTACTAACTGCTGGCTACCGGAGAATGCTGTTAGATGGGAAGATGAGAATATGCTTGTTTCCTGTGGAAAATTTAAAATCGGAACAGGTGCTCAACCCTACACTTATGCTAACACCTATTCTGTTTCACATCAGGTGCAAGCTATTACTGATGATATGAAGAAGGAATATGAAATTTTTCCAAGGAAAGGTGAAATTTGGGCTTTGTATAGGAATTGGACAACTAAAATAAAACGTTCGGATTTGGAAAACTGGGAGTATGACATAGTGGAAATTGTTGGAAAAAATGATTTGTGGATGGATGTTTTGCCTTTGGAGTTGGTAAGTGGTTATAACTCAGTTTTTAAGGGCAAATCAAATGGCGGATCAGCTTTGAACATGAGAATATCCAGGAAAGAGTTGCTCAGATTCTCACACCAAATCCCTGCCTTCAAATTGACAGAAGAAAATGGTGGTGATCTGAGAGGCTTCTGGGAACTTGATCCGGGAGCACTGCCTCTCCACTATTTTGGCAATAAATGA 2925 0.4027 MECNKEEALRAKDIAEKKLENKDFRMARKFALKAQQLYPDLENITQMLIVCDVHCSAELKLFGNEMDWYKILQIELTANDATIKKQYRKLALQLHPDKNKFSGAEAAFKLIGEAQRVLLDKEKRSRLDMNLRRVPRNRTAMSSNHQQNVQMNFNPVMQTNVRPNFTNLNPQQQQQSRQASQQGLNGGHPTFWTVCSFCSAKYEYYRDVLNRVLRCQHCNRPFIAYDVNVQGTTPAVNLSQQAFGAQNDSQNHGAFKVGVGSQSNLHTHRSNKESHMKGGRTADVSVKPNGKRKRKQVAESSESSESICSTDSEEDMLSEKDMLSEKNGFPGVSSYREERPRRSTRQKHQVSYKENLSDDDDEGSGSPVGVGENHGEAAKMNEQNSLATDLKGDQEKVKQKQKFYSEESLQNVNKETKEVRGKEAEGSSKIDEASEDSTFKSTNHPDYFVYPDPEFSDFDKDKKEECFTAGQIWAIYDTVDGMPRFYALIRKVLSPGFKLRITWFEPDPDDYDEIKWFGESLPVACGKHKLGGTETTENRLMFSHLISCEKSGRSFYKVYPRKGETWALLKNWDIKWHMDAESHRQYDFEFAEILSDYVEGVGVVVAYLAKLKGFVSLFSRIEGGNRTSQILPVELFRFSHRVPSFKMTGQERVGVPVGSYELDPVSLPMNLEEIAVAEDLEVKVGHCPTVGMSTRSSQKSEFIINLEGDASTAKVNLQRSNSAEEKKDPVDNGSAPSASATEAFEIPDPVFCNFDAARSIENFKINQIWAFYSDEDGLPKYYGQIECVLTSETDVQLQVTYLTNCWLPENAVRWEDENMLVSCGKFKIGTGAQPYTYANTYSVSHQVQAITDDMKKEYEIFPRKGEIWALYRNWTTKIKRSDLENWEYDIVEIVGKNDLWMDVLPLELVSGYNSVFKGKSNGGSALNMRISRKELLRFSHQIPAFKLTEENGGDLRGFWELDPGALPLHYFGNK* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1682 974 MobiDBLite consensus disorder prediction 162 184 - -
Apr1g1682 974 MobiDBLite consensus disorder prediction 248 438 - -
Apr1g1682 974 MobiDBLite consensus disorder prediction 268 300 - -
Apr1g1682 974 Gene3D DnaJ domain 64 182 IPR036869 -
Apr1g1682 974 CDD DnaJ 67 120 IPR001623 -
Apr1g1682 974 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Apr1g1682 974 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 972 - -
Apr1g1682 974 MobiDBLite consensus disorder prediction 411 438 - -
Apr1g1682 974 SMART dnaj_3 66 123 IPR001623 -
Apr1g1682 974 SUPERFAMILY Chaperone J-domain 64 138 IPR036869 -
Apr1g1682 974 MobiDBLite consensus disorder prediction 389 403 - -
Apr1g1682 974 Pfam Domain of unknown function (DUF3444) 742 950 IPR024593 -
Apr1g1682 974 Pfam Domain of unknown function (DUF3444) 447 651 IPR024593 -
Apr1g1682 974 MobiDBLite consensus disorder prediction 248 267 - -
Apr1g1682 974 MobiDBLite consensus disorder prediction 335 360 - -
Apr1g1682 974 Pfam DnaJ domain 67 128 IPR001623 -
Apr1g1682 974 PRINTS DnaJ domain signature 69 87 IPR001623 -
Apr1g1682 974 PRINTS DnaJ domain signature 87 102 IPR001623 -
Apr1g1682 974 PRINTS DnaJ domain signature 103 123 IPR001623 -
Apr1g1682 974 MobiDBLite consensus disorder prediction 715 739 - -
Apr1g1682 974 PANTHER - 1 972 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1682 Apr-Chr1 26490853 26496467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1682 4 227 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.371 2.21e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1682 - - gmx:100779228 1540.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1682 1 26490853 26496467 Apr1g1682 1 26490853 26496467 ECH
Apr9g2192 9 29880735 29885200 Apr1g1682 1 26490853 26496467 PCT