Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1675 ATGGCGATAATAAGGAGCATAATTCAGGAGATGAGATCAAGGTCGCATCGAGTGGTTCAGGAGCAAGAGGAGGTTCTGATTGATGATGGCATGAAGCAGAGTTGTTGGGCCAACATGCCACAAGAGCTTCTTCGTGAGGTTCTCCTTCGAATCGAGGCTTCCGAGGACACGTGGCCACCCAGGAAGAACGTTGTGGCATGTGCTGGAGTGTGCCGTAGCTGGAGACAGATCACAAAAGACATCGTCAAAACACCACAACTCTCTTCCAAGATAACCTTCCCCATTTCTGTTAAACAGCCTGGCCCAAGGGAGAATCTCCTCCAGTGCTTTATAAAGCGCAACCGGTCCACCCAAACATATTATTTGTATCTCAGTTTATCTAGTACATTATCTGATGATGGGAAATTCCTTCTGGCTGCACGCAAATGCAGACGTCCCACTTGCACAGATTATGTAATCTCTCTAGATGCGGATGATATGTCAAAGGGAAGCAACACCTATGTTGGGAAACTAAGATCAAATTTTCTTGGAACCAAGTTCACAATCTATGATGGCCAGCCACCTCATGCAGGGGCAAAGATTATGAAGAGTCGGTCCACTAGACTGGTGAATCTAAAGCAAGTTTCACCCAAGGTCCCTACAGGCAATTATCCAGTGGCACACATTTCATATGAATTGAATGTGCTAGGCTCTAGGGGGCCTAGGAGAATGCATTGTGTCATGGACTCCATTCCTACCTCAGCGATTGAACCTGGAGGGGTAGCCCCTACACAGACCGAGTTTTGTCTTAGCAGCATAGATATGTTTCCTTCATTCCCCTTTTTTCGATCAAAATCAAAGCGTGTGGAAAATTCCGTGTCTAGACCCCTGGGGGATCAAAATGATGGGATGCTAGTGTTGAAAAACAAGGCTCCCAGGTGGCACGAACAGCTACAGTGTTGGTGCTTAAACTTTCATGGTCGGGTGACAATTGCCTCAGTTAAAAACTTTCAACTGGTGGCTTCTGCAGAAAATGGACCTGCTGGACCAGAACATGATAAGATTATCCTCCAATTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGGTACCCTATTTCGGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATGA 1167 0.4584 MAIIRSIIQEMRSRSHRVVQEQEEVLIDDGMKQSCWANMPQELLREVLLRIEASEDTWPPRKNVVACAGVCRSWRQITKDIVKTPQLSSKITFPISVKQPGPRENLLQCFIKRNRSTQTYYLYLSLSSTLSDDGKFLLAARKCRRPTCTDYVISLDADDMSKGSNTYVGKLRSNFLGTKFTIYDGQPPHAGAKIMKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPTSAIEPGGVAPTQTEFCLSSIDMFPSFPFFRSKSKRVENSVSRPLGDQNDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1675 388 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 4 388 - -
Apr1g1675 388 Gene3D - 29 91 - -
Apr1g1675 388 Gene3D Tubby Protein; Chain A 93 388 IPR025659 -
Apr1g1675 388 ProSitePatterns Tub family signature 2. 373 388 IPR018066 -
Apr1g1675 388 Pfam F-box domain 36 83 IPR001810 GO:0005515
Apr1g1675 388 SUPERFAMILY F-box domain 30 80 IPR036047 GO:0005515
Apr1g1675 388 ProSitePatterns Tub family signature 1. 318 331 IPR018066 -
Apr1g1675 388 Pfam Tub family 97 383 IPR000007 -
Apr1g1675 388 PRINTS Tubby superfamily signature 151 167 IPR000007 -
Apr1g1675 388 PRINTS Tubby superfamily signature 167 191 IPR000007 -
Apr1g1675 388 PRINTS Tubby superfamily signature 216 243 IPR000007 -
Apr1g1675 388 PRINTS Tubby superfamily signature 300 317 IPR000007 -
Apr1g1675 388 PRINTS Tubby superfamily signature 318 334 IPR000007 -
Apr1g1675 388 PRINTS Tubby superfamily signature 345 364 IPR000007 -
Apr1g1675 388 PRINTS Tubby superfamily signature 366 388 IPR000007 -
Apr1g1675 388 SUPERFAMILY Tubby C-terminal domain-like 85 388 IPR025659 -
Apr1g1675 388 PANTHER TUBBY-RELATED 4 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1675 Apr-Chr1 26428160 26432245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1675 12 388 TUB Transcription Factor Family AT2G47900 73.158 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Apr1g1675 Tub 3.3e-114 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1675 K19600 - gmx:100778346 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1675 1 26428160 26432245 Apr1g1675 1 26428160 26432245 ECH
Apr9g2198 9 29946891 29949931 Apr1g1675 1 26428160 26432245 PCT