Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1665 ATGGCGAGACCTTCCAAGCCACAACTCTCTTCTGACGAAGCTCTTTCCAATGCTTCAAGTTCGTCGTCGGAGGAAGAGCCGGTCAATGAACAGATCAACGAAGAGGAAGACGAGGAAGAGCTTGAGGCGGTGGGGCGCTCCGCCAGTTCCGACGACGACGACGACGAAGTCGCCGATGACAATCCGCCGGATTCGGATGAAGATCCTGCTGCCGCCGAAGATGCTGACGATGACCAGGGCAGGGATAATGTTGATCCCGAAGTTAGCAAACGAGAGAAGGCTAGGCTAAGAGAAATGCAAAAAATGAAGAAGCAGAAGATTCAGGAGATACTAGATGCGCAAAATGCGGCTATCGATGCCGACATGAACAACAGAGGAAAGGGGCGCCTGAAGTATCTCTTGCAGCAGACTGAGCTGTTTGCACATTTTGCAAAAGGTGATCAATCTTCATCTCAAAAGAAGTCGAGGGGAAGGGGCCGCCATGCATCAAAAGTGACTGAGGAAGAAGAAGACGAAGAATACCTAAAAGAAGAAGAAGATGGTGTAGCAAACACACGCCTGGTGACACAACCATCATGTATCCAAGGGAAGTTGAGGGATTACCAGCTGGCTGGACTAAACTGGCTCATACGATTGTATGAAAATGGAATAAATGGAATTCTGGCTGATGAAATGGGGCTCGGTAAAACATTGCAAACTATATCTTTATTGGGTTATCTGCATGAGTTCAGAGGAATCAAAGGTCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGACGCTTTTGCCCTATTCTTCGTGCAATAAAGTTTCTTGGCAACCCTGATGAAAGGAGACATATAAGAGAGGAATTGTTGGTTGCTGGGAAGTTTGATGTTTGTGTTACAAGTTTTGAAATGGCAATCAAGGAGAAGTCTGCTTTGCGTCGGTTTAGTTGGCGCTACATAATTATTGATGAAGCTCATCGAATCAAGAATGAGAATTCGTTGCTGTCCAAAACAATGAGACTCTACAGTACAAACTATCGACTCCTTATAACTGGCACACCCCTTCAGAATAATCTTCATGAACTCTGGTCTCTTCTCAACTTTCTTTTGCCTGAAATTTTTAGTTCTGCTGAAACTTTCGATGAGTGGTTTCAAATATCTGGTGACAATGACCAGCAGGAGGTTGTTCAACAATTACACAAGGTTCTCCGCCCATTTCTCCTTCGGAGGTTGAAGTCAGATGTTGAAAAAGGGTTGCCACCGAAAAAGGAAACCATTCTTAAAGTAGGCATGTCCCAAATGCAGAAACAGTATTATAGAGCACTGTTGCAGAAGGATCTTGAGGTTGTAAATGCTGGTGGTGAACGAAAACGCCTCCTTAACATAGCTATGCAACTACGCAAGTGTTGTAACCATCCATATCTTTTTCAAGGTGCTGAACCTGGTCCTCCCTACACAACAGGAGATCATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGGGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTGGACATACTTGAAGATTATTTAATGTTTCGTGGATATCAATATTGTCGCATAGATGGCAATACTGGTGGGGATGATCGAGATGCTTCCATTGATGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCAACCCGAGCTGGAGGTCTTGGTATTAATCTTGCTACTGCTGATGTTGTCATTCTGTATGATAGTGACTGGAACCCACAAGTTGACTTACAGGCTCAGGATCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTGCAAGTTTTCCGTTTTTGTACCGAGTATACAATTGAGGAGAAAGTCATTGAAAGGGCTTACAAAAAACTTGCACTTGATGCTCTGGTGATTCAGCAAGGCCGATTGGCCGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACGGATGAAGATATTGATAGAATTATTGCTAAGGGAGAGGAGGCAACTGCAGAGCTTGATGCCAAGATGAAGAAATTTACTGAAGATGCAATCAAATTTAAGATGGATGACACTGCTGAGTTGTATGATTTTGATGATGAAAAGGATGAGAACAAATTTGATTTCAAAAAAATTGTGAGTGAAAACTGGATTGAACCACCAAAAAGGGAGCGGAAGCGCAATTACTCAGAATCTGAATACTTCAAGCAAACAATGCGCCAAGGTGGTCCTACCAAACCGAAAGAGCCCCGTATTCCCAGGATGCCCCAGTTGCATGATTTCCAGTTTTTTAACACACAAAGGTTGAGTGAGCTATATGAAAAGGAAGTACGTTACCTCATGCAAACACACCAGAAGAATCAGATAAAGGACTCGATAGATGTTGATGAACCAGAAGAGGTGGGAGACCCACTGACTGCTGAGGAATTGGAAGAAAAGGAACGCTTACTAGAAGAGGGATTTTCATCATGGAGCCGAAGGGATTTTAATACTTTCATTAGGGCCTGTGAAAAATATGGCCGAAACGATATAAAAAGTATTGCTTCTGAAATGGAAGGGAAAACTGAGGAGGAGGTTGAAAGATATGCAAAGGTCTTCAAAGAAAGATACAAGGAACTAAATGATTATGATAGAATTATTAAAAACATCGAAAGGGGGGAAGCAAGAATTTCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCTTGGCTAGAATTGAAGATACAGTATGGACAAAACAAAGGGAAGTTATACAATGAAGAATGTGACAGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAACTGGGATGAATTAAAGGCAGCATTTCGAACATCACCCTTGTTTCGATTTGATTGGTTTGTTAAGTCTCGCACAACTCAGGAACTTGCAAGGAGGTGTGACACCCTCATTCGTTTGGTAGAAAAGGAAAACCAAGAGTATGATGAGAGGGAAAGGCAGGCTCGCAAGGAAAAGAAACTTGCCAAAAGCATGACCCCATCAAAGCGTGCCTTGGCAAGACAGACTGAGAGTCCGTCTTTGAAGAAACGCAAGCAGTTAACCATGGATGATTATGGAAAGAGGAGAAAATAA 3210 0.4243 MARPSKPQLSSDEALSNASSSSSEEEPVNEQINEEEDEEELEAVGRSASSDDDDDEVADDNPPDSDEDPAAAEDADDDQGRDNVDPEVSKREKARLREMQKMKKQKIQEILDAQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKKSRGRGRHASKVTEEEEDEEYLKEEEDGVANTRLVTQPSCIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAIKFLGNPDERRHIREELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGDNDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQIKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRALARQTESPSLKKRKQLTMDDYGKRRK* 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1665 1069 Gene3D iswi atpase 904 936 - -
Apr1g1665 1069 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 761 851 IPR036306 GO:0003677|GO:0006338|GO:0031491
Apr1g1665 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 413 IPR027417 -
Apr1g1665 1069 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 654 IPR001650 -
Apr1g1665 1069 MobiDBLite consensus disorder prediction 1 101 - -
Apr1g1665 1069 SMART ultradead3 194 386 IPR014001 -
Apr1g1665 1069 MobiDBLite consensus disorder prediction 1020 1037 - -
Apr1g1665 1069 ProSiteProfiles SANT domain profile. 848 900 IPR017884 -
Apr1g1665 1069 MobiDBLite consensus disorder prediction 144 178 - -
Apr1g1665 1069 Pfam SLIDE 906 1016 IPR015195 GO:0003677|GO:0005634|GO:0006338
Apr1g1665 1069 Gene3D - 937 1040 - -
Apr1g1665 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 696 IPR027417 -
Apr1g1665 1069 SMART helicmild6 529 613 IPR001650 -
Apr1g1665 1069 Gene3D - 419 711 IPR027417 -
Apr1g1665 1069 Gene3D ISWI, HAND domain 750 848 IPR036306 GO:0003677|GO:0006338|GO:0031491
Apr1g1665 1069 Gene3D - 199 414 IPR038718 -
Apr1g1665 1069 Gene3D - 849 903 - -
Apr1g1665 1069 MobiDBLite consensus disorder prediction 1048 1069 - -
Apr1g1665 1069 MobiDBLite consensus disorder prediction 82 101 - -
Apr1g1665 1069 CDD DEXHc_SMARCA1_SMARCA5 195 415 IPR044754 GO:0005524
Apr1g1665 1069 Pfam HAND 762 844 IPR015194 GO:0003677|GO:0006338|GO:0031491
Apr1g1665 1069 MobiDBLite consensus disorder prediction 52 81 - -
Apr1g1665 1069 MobiDBLite consensus disorder prediction 1020 1069 - -
Apr1g1665 1069 Coils Coil 1006 1033 - -
Apr1g1665 1069 MobiDBLite consensus disorder prediction 28 42 - -
Apr1g1665 1069 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 375 IPR014001 -
Apr1g1665 1069 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 9 1066 - -
Apr1g1665 1069 MobiDBLite consensus disorder prediction 9 27 - -
Apr1g1665 1069 Pfam SNF2-related domain 211 478 IPR000330 GO:0005524|GO:0140658
Apr1g1665 1069 SUPERFAMILY Homeodomain-like 904 1026 IPR009057 -
Apr1g1665 1069 PANTHER SNF2/RAD54 HELICASE FAMILY 9 1066 - -
Apr1g1665 1069 CDD SANT 852 896 IPR001005 -
Apr1g1665 1069 Pfam Helicase conserved C-terminal domain 501 613 IPR001650 -
Apr1g1665 1069 SUPERFAMILY Homeodomain-like 852 902 IPR009057 -
Apr1g1665 1069 CDD SF2_C_SNF 499 624 - -
Apr1g1665 1069 Coils Coil 89 116 - -
Apr1g1665 1069 SMART sant 951 1012 IPR001005 -
Apr1g1665 1069 SMART sant 849 898 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1665 Apr-Chr1 26348222 26357475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1665 190 640 RAD5 or RAD16-like Gene Family AT1G02670 26.916 8.78e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr1g1665 SNF2_N 5e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1665 K11654 - gmx:100809750 1934.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1665 1 26348222 26357475 Apr1g1665 1 26348222 26357475 ECH
Apr9g2208 9 29996888 30006069 Apr1g1665 1 26348222 26357475 PCT