Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1664 ATGGGTGGGTGTTTTCCTTGTTTTGGATCATCCAACAAGGACAATAATGGGGTGAAGGAAGTGCCAAACAAGGATTCTTTCAAAGAAACTGCTTCTGTTGTTCCTCAGTCTCACCACCCCAGCCGGGTTAGCTCAGATAAATTAAAATCTTCACGAAGTGGCTCGGATACTAAGAAGGAAGCGCCAGTTCCAAAGGATGGGCCAACGGCCCATATTGCTGCACAAACATTTACATTCCGAGAGCTTGCAGCTGCTACAAAGAATTTTAGGCCGGAATGTTTATTAGGTGAAGGAGGTTTTGGGCGTGTTTACAAAGGTCGCCTTGAGAGCACAGGACAAGTAGTTGCTGTAAAACAGCTTGACCGAAATGGTCTTCAAGGAAATCGAGAGTTTTTGGTGGAAGTTCTCATGCTCAGCCTCTTACATCATCCAAATCTTGTAAACTTAATTGGTTATTGTGCTGATGGTGATCAGCGGCTGCTTGTTTATGAATTTATGCCATTGGGATCTTTGGAGGATCATTTACACGATCTTCCTCCTGACAAAGAACCTCTGGACTGGAACACTAGGATGAAAATAGCAGCTGGAGCAGCAAAGGGATTGGAATATTTGCATGACAAGGCAAATCCCCCTGTGATATATAGAGATTTAAAATCATCCAACATCCTCCTAGATGAGGGTTACCATCCCAAGTTATCAGATTTTGGGCTGGCAAAACTTGGTCCAGTTGGTGACAAGACTCATGTATCCACACGAGTAATGGGAACATATGGCTATTGTGCCCCAGAATATGCTATGACTGGTCAGTTAACTCTGAAATCAGATGTCTACAGTTTTGGAGTTGTCTTCCTTGAACTTATTACTGGACGTAAGGCTATTGACAATACACGTGCACATGGAGAGCATAATCTCGTTGCTTGGGCACGGCCTCTTTTCAAAGACCGTAGAAAGTTCCCCAAAATGGCTGATCCTCTACTGCAAGGCCGGTATCCAATGCGAGGACTGTACCAAGCACTAGCAGTTGCAGCAATGTGTCTGCAGGAACAAGCTGCTACAAGGCCTCTTATTGGGGATGTCGTGACTGCTCTCACGTATCTGGCCTCTCAGACATATGACCCAAATGCAGCCAGTCAATCCAACAGGGTAGGTCCATCAACCCCTAGGAACAGGGATGACAGAAGAGGCATGGCAGATGGTGTGGATAGCCCAGACCGTGGACGGCTTGGCTCTCCTTCCACTCACAGAAACTCACCTGACTTCAGAAAGAGAGACAGCAGAGATCCAATTGTGGGAACAGAGTTAGGCAGGAGTGAAACTGGTGGTGGATCAGGGAGAAAATGGGGATTGGATGATTTAGAAAGGCAGGAATCTCATAGAGACAGCCCTGAAAATACTGGAAGAACGAGGGAGACTCCATGGAACCGTGACCTGGACAGAGAACGTGCAGTTGCAGAAGCCAAAGTGTGGGGTGAGAATTGGAGAGAGAAGAAGAGAGCAAATGCCATGGGTAGCTTTGATGCCACAAATGAGTGA 1533 0.4638 MGGCFPCFGSSNKDNNGVKEVPNKDSFKETASVVPQSHHPSRVSSDKLKSSRSGSDTKKEAPVPKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAASQSNRVGPSTPRNRDDRRGMADGVDSPDRGRLGSPSTHRNSPDFRKRDSRDPIVGTELGRSETGGGSGRKWGLDDLERQESHRDSPENTGRTRETPWNRDLDRERAVAEAKVWGENWREKKRANAMGSFDATNE* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1664 510 PANTHER OS07G0668900 PROTEIN 1 504 - -
Apr1g1664 510 MobiDBLite consensus disorder prediction 386 401 - -
Apr1g1664 510 Gene3D Transferase(Phosphotransferase) domain 1 166 383 - -
Apr1g1664 510 CDD STKc_IRAK 95 364 - -
Apr1g1664 510 SMART serkin_6 89 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1664 510 Pfam Protein kinase domain 94 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1664 510 MobiDBLite consensus disorder prediction 416 431 - -
Apr1g1664 510 MobiDBLite consensus disorder prediction 1 70 - -
Apr1g1664 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Apr1g1664 510 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Apr1g1664 510 MobiDBLite consensus disorder prediction 447 480 - -
Apr1g1664 510 MobiDBLite consensus disorder prediction 373 480 - -
Apr1g1664 510 Gene3D Phosphorylase Kinase; domain 1 62 165 - -
Apr1g1664 510 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 1 504 - -
Apr1g1664 510 ProSiteProfiles Protein kinase domain profile. 89 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1664 510 MobiDBLite consensus disorder prediction 42 65 - -
Apr1g1664 510 SUPERFAMILY Protein kinase-like (PK-like) 71 363 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1664 Apr-Chr1 26339333 26347496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1664 4 368 Glycoside Hydrolase AT3G07070 65.489 2.18e-171 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Apr1g1664 Pkinase 5.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1664 - - gmx:100814575 965.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1664 1 26339333 26347496 Apr1g1664 1 26339333 26347496 ECH
Apr9g2207 9 29993102 29995564 Apr1g1664 1 26339333 26347496 PCT