Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1657 ATGTCCACCTCTAGAACCTCAAATGCTTCCCTCAAAGGATATGAGTCCAACCAAAACCAAATGAACCAATCACTTCTTCAACGCAATATATCTCCTTCTAGTGATAGAAGAAGCCGTGGAAAGCAATCAGAACCTGGAAGGTTTCTTGGAGTTAGAAGACGCCCTTGGGGTAGATATGCTGCTGAAATCAGAAACCCCACAACCAAAGAAAGACATTGGCTTGGAACATTTGACACTGCTCATGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGATCACAAGCAAAAACCAACTTCATATATTCTCAAGACATCAATTTTCACAATGTTCTCTCACCCATGCATGCTCAACCTCTCTTACCATCTTCACACTTTTTCACTAACACACACACCACACAACCAACCCATCAAAATAGCTTGTCTCAACTGGATACTATTACTTCCCACGTTGAAAATAACATGGGTAGTGAAACTAGTGCATATGGATCACCTCAAGATGATAATTTTTTCTTCTCTAGTGACTCTAACTCAGGCTATTTGGAATGCATTGTTCCTGGTAATTGTTTCAGGAAGAAGGGCAATGCTAGTGCTTCAAGTGACCAAAAGGGTAGCCACGTTAACACAAACTCCATGCAAGTTCAGTCACATTTTGACAACACTGCATTCACTCAAGAAGGCTTGAACATGCAAACAACAGTGGCATCTAACTTTGCAGATTTTTCTTACTCAGGATTGTGTGATAATCAGCAATCATGGGATTACAATTCCAATGAACTTGCAGCTATGTTTAACATTCCATCATCAAGGGTTGATGATGGGTGCATGGATACATTGTGTTCCATCACAGATAGTCCAAGCTATGGACTAATGACTCAGGTTGTTTCTTCAACAACCTGTTCTCCATCACTTCCTCCTTCTGGGGATGTTGACTTGGGATACTCATTCTTCTGA 963 0.4123 MSTSRTSNASLKGYESNQNQMNQSLLQRNISPSSDRRSRGKQSEPGRFLGVRRRPWGRYAAEIRNPTTKERHWLGTFDTAHEAALAYDRAALSMKGSQAKTNFIYSQDINFHNVLSPMHAQPLLPSSHFFTNTHTTQPTHQNSLSQLDTITSHVENNMGSETSAYGSPQDDNFFFSSDSNSGYLECIVPGNCFRKKGNASASSDQKGSHVNTNSMQVQSHFDNTAFTQEGLNMQTTVASNFADFSYSGLCDNQQSWDYNSNELAAMFNIPSSRVDDGCMDTLCSITDSPSYGLMTQVVSSTTCSPSLPPSGDVDLGYSFF* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1657 320 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 320 - -
Apr1g1657 320 MobiDBLite consensus disorder prediction 1 51 - -
Apr1g1657 320 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Apr1g1657 320 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Apr1g1657 320 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Apr1g1657 320 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
Apr1g1657 320 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Apr1g1657 320 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 320 - -
Apr1g1657 320 MobiDBLite consensus disorder prediction 1 33 - -
Apr1g1657 320 MobiDBLite consensus disorder prediction 34 48 - -
Apr1g1657 320 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Apr1g1657 320 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Apr1g1657 320 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1657 Apr-Chr1 26251029 26251991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1657 1 212 AP2-EREBP Transcription Factor Family AT5G18560 43.182 2.24e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr1g1657 AP2 2.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1657 - - gmx:102664746 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2215 9 30063834 30064853 Apr1g1657 1 26251029 26251991 PCT