Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1656 ATGGAGCAGTACGGCCAGTTCAGTGAAGGTTCGCGGTCTGATCCGTCGCCGGAATGGACCGGAACCGGTGGAGAAACCGGGCTCGAAGAGCCTATGTGGCAATTGGGATTGGGTGCTGCAGAGGAATCGTATCCGCAACGCCCCAATGAGGCTGATTGCACCTACTATTTGAGGACCGGTTTCTGTGGCTTCGGTTCTCGGTGTCGGTTCAACCATCCACGTGACCGTGCTGCGGTTGTTGGAGCTGAGAGGACTGTGGGGGAGTATCCGGAGCGAGTAGGCCAGCCTGTGTGCCAGTATTATATGAGGACCAGATCATGTAAATTCGGTGCTTCTTGCAAGTACCACCACCCTCGGCAGGCTGGAGGGAGTGCCACCGTTGTGTCACTTAATTATTATGGATATCCGTTGCGACCGGGTGAGAAAGAGTGTTCCTATTATGTGAAGACGGGGCAATGTAAGTTTGGTGCAACTTGTAAATTTCATCATCCGCTTCCTGCTGGGGTCCAAATTCCAGCACCATCACCAGTTGCCCCAGTTTCGCCTTTACCTGTACCTGTACCTTCTCCATTATATTCAACCGTACAGCCTCCACCCGGTCCTTCATCCCAGCAAATTGGTGTACTGGTTGCAAGGCCACCTCTGATGCCTGGCTCATTAGTCCAGAGCCCCTATGGACCTGTGGTATTGTCCCCTGCCATGGTCCCTATTTCTGGCTGGGGTCCTTATCAAGCTCCTGCAACAGGCCCTGTACTTCCTTCTGGTACTCCATCCAATGTTGCTTCAGCACACCTGTACGGGATGACCCAGCTACCTTCATCAGCAGCTGCATATCCTGGACCTTATCAACCTTCTGGTTCCTCAGTTGGTCCACCTAGCAGTAGTCAGAAGGAGCAGGCATTTCCAGATGGGCCTAATCACCCAGAATATCAGTATTACGGGAAAACGGGGGAAGTTAAATTTGGTCCATCATATAGGTATCACCCTCCTCCAGATGCGAATGCACCAAAAGTGAATGTGATTCTTAGTCCTGCAGGTCTTCCTTTGCGCCCGGGGGCATTACCTTGTACTCATTATGCACAGCATGGAGTATGTAAGTTTGGTTCTGCATGCAAATTTGATCATCCTGTGGGATCACAGGGTTATAGTCCATCTGCTTCTTCCCTGGCTGAAATGCCGGTTGTACCCTATCCTGTGGGTTCATCAACTGGTACTCTTGCTCAATCATCTTCATCATCCGAGTTGCGGCCTCAACCTACCCCTGGATCCAGCAAGGAGTCTACACCATCCAGAATGTCTTCATCAAGGAGCATGTTAACTGAATCAATTGGCTTGACCTTATCAACTGGTGGACCTGTTTCTCAATCAACCGATTATCAATCTGCTCAGAGTTCCAGTCCTTCGGCAGCTGCTACTACCACCACAAGTAGCATTATCTCTCACACCTCAAGCTAA 1455 0.5072 MEQYGQFSEGSRSDPSPEWTGTGGETGLEEPMWQLGLGAAEESYPQRPNEADCTYYLRTGFCGFGSRCRFNHPRDRAAVVGAERTVGEYPERVGQPVCQYYMRTRSCKFGASCKYHHPRQAGGSATVVSLNYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPLPAGVQIPAPSPVAPVSPLPVPVPSPLYSTVQPPPGPSSQQIGVLVARPPLMPGSLVQSPYGPVVLSPAMVPISGWGPYQAPATGPVLPSGTPSNVASAHLYGMTQLPSSAAAYPGPYQPSGSSVGPPSSSQKEQAFPDGPNHPEYQYYGKTGEVKFGPSYRYHPPPDANAPKVNVILSPAGLPLRPGALPCTHYAQHGVCKFGSACKFDHPVGSQGYSPSASSLAEMPVVPYPVGSSTGTLAQSSSSSELRPQPTPGSSKESTPSRMSSSRSMLTESIGLTLSTGGPVSQSTDYQSAQSSSPSAAATTTTSSIISHTSS* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1656 484 MobiDBLite consensus disorder prediction 1 20 - -
Apr1g1656 484 Gene3D - 123 171 - -
Apr1g1656 484 MobiDBLite consensus disorder prediction 287 301 - -
Apr1g1656 484 Gene3D - 44 122 - -
Apr1g1656 484 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Apr1g1656 484 SUPERFAMILY CCCH zinc finger 49 76 IPR036855 GO:0046872
Apr1g1656 484 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 472 - -
Apr1g1656 484 PANTHER PROTEIN PHOSPHATASE RELATED 1 472 - -
Apr1g1656 484 MobiDBLite consensus disorder prediction 400 484 - -
Apr1g1656 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 164 IPR000571 GO:0046872
Apr1g1656 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 355 376 IPR000571 GO:0046872
Apr1g1656 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Apr1g1656 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 74 IPR000571 GO:0046872
Apr1g1656 484 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Apr1g1656 484 MobiDBLite consensus disorder prediction 401 484 - -
Apr1g1656 484 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Apr1g1656 484 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Apr1g1656 484 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Apr1g1656 484 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Apr1g1656 484 MobiDBLite consensus disorder prediction 1 27 - -
Apr1g1656 484 MobiDBLite consensus disorder prediction 277 313 - -
Apr1g1656 484 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Apr1g1656 484 SUPERFAMILY CCCH zinc finger 140 165 IPR036855 GO:0046872
Apr1g1656 484 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Apr1g1656 484 SUPERFAMILY CCCH zinc finger 354 378 IPR036855 GO:0046872
Apr1g1656 484 SUPERFAMILY CCCH zinc finger 95 120 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1656 Apr-Chr1 26234232 26246579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1656 1 414 C2H2 Transcription Factor Family AT5G18550 58.451 2.86e-145 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr1g1656 zf-CCCH 7.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1656 - - gmx:100812433 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1656 1 26234232 26246579 Apr1g1656 1 26234232 26246579 ECH
Apr9g2216 9 30066638 30072066 Apr1g1656 1 26234232 26246579 PCT