Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1648 ATGTCACTTTCCAGCGCCAAAAACTTCTTCCAGAGGTTCTGGTTAGATGAATTCCAATTGGGAAATTTTTCCCATGGAAGCTTTTTGTCCAATGATGATCTCTTGCCATCTCTTGGAGCTAGAATAAACCAGGAAACTAGACTACGAAAATACATAATCTCCCCTTTCAATCCTCAGTATAGGGCTTGGGAGATGTTACTGGTCGTTCTAGTCATATACTCGGCTTGGATTTGCCCGTTTGAGTTTGCATTTCTTCCTTATAAGCAAGATGCACTATTCATCATAGACAACATTGTCAATGGCTTCTTTGCCATTGACATCATGCTGACATTCTTTGTTGCTTACCTTGATAACCATTCTTATCTTCTTGTTGATGATCCAAAGAGAATTGCAATAAGGTACCTATCTACCTGGTTTGCTTTTGATGTCTGCTCAACTGTACCATTGCAATCCTTCAGCTTTCTCTTCACTAATCATAGCAGTGAGCTTGGCTTCAAAGCCTTCAACATGTTTCGATTATGGCGTTTGAGACGAGTCAGTTCTTTATTTGCAAGACTTGAAAAGGACATTCGCTTCAATTATTTTTGGACTAGGTGCACAAAGCTCATTGCTGTGACCTTGTTTGCAGTGCACTGTGCAGGATGCTTTAACTATCTCATTGCAGATAGGTATCCTGATTCCAAAAGAACCTGGATCGGTGCAATGTACCCAAACTTTAAAGAAGAAAGTCTTTGGGACAGATATGTCACTGCAATATACTGGTCCATTGTCACCCTTACTACCACTGGCTATGGTGATTTGCATGCTGAGAACACGAGAGAGATGTTGTTTGATATTGCTTACATGTTGTTCAACTTGGGTTTAACATCATACATCATTGGAAATATGACTAACCTTGTAGTCCACTGGACCAGCCGTACAAGAAACTTTAGGGATACAGTCAAAGCAGCTTCTGAATTTGCATCAAGAAATCATTTGCCACATCGCATACAGGATCAAATGTTGTCACACATATGTTTGAGGTTTAAGACAGAAGGACTGAAGCAGCAAGAAACATTAAATGATCTTCCAAAGGCAATCCGTTCAAGCATTGCGCACCATCTCTTTTTTCCTGTTGTGCAGAAGGTCTACCTCTTCCAAGGAGTCTCCCATGATTTCCTTTTTCAACTGGTTTCAGATATGGAGGCTGAGTATTTCCCACCCAAGGAAGATGTGGTACTGCAAAACGAGTCTTCCACAGACCTTTATGTGCTGGTTTCAGGAGCAGTGGATCTCATTCGCTACATTGATGGGCATGATCAAGTTCTTGGGAAGACAGTTGCAGTTGATGCATTTGGAGAGATTGGTGTTTTATATGGTGTACAACAGCCTTTCACAGTTCGGACCACAGAGCTTTCTCAAATTTTAAGAGTCAACAAAACATCCTTAATGAATGTTTTACGAGCAAATCCACGAGATGCACAAATTATAATGGATAACCTTTTAATGAGATCAAAGGGGCCTGAAGGTTTCGGCTTTGAATATCCATGTACTGATTCTGGATTTGTTCCGCATGAAGTACTTCAAGGAGGCAACAAGAGAGGAAGCTCCTCTTCTCCTGAGTGTGCAAATAATTCCCTCGAGCATTCATTAACACATGAAGGAAAGCACACAATTATTAGAGACTCGGAAACCAGCTTGAGTAAAGTGACTAATGATGATCATTTAGTCTCTAAATATAACATGATCCCTGAGGATAATAGAAGAGATCCCCATGCGGTTACACATAAGGGGAATCTAGACGTTGTTGAAATTCTGCTTGAAAGAGACGGGAATGCAAAGAACCCAAATGCCATCGGGTGGACACAAAAACCTCTGGTAAAACAGCCAAAAAACAAGGGCATCTCCGACCAAAAAATGAGTTGTGAAAACGAGAAGACAGATGAATTTAGAATAGCAATTACGGAGCCAGAAATCCCTGACTTTCAAAGAAATGGCTCAACTAGAAACAGAAAAGATGGTATTAGATCTATCAACTTCCCATTAGAGAAAGTGTACACAAAATCCAATTCAAGAAATTTGAACTGTCCAAGTGATAGAGAAGCGGCAATGTCTATCAAGAAGAGAGTAACAATCCATTTGCTAAAGGGATGCAGAAGTACCTCACGGGGACAGCATGGAAAACTGATAATCCTACCTGATTCATTAGAAGAGCTGTTCAAAGTTGCTGGTGAAAAATTCGGTAACATCGGCCCTACAAAAGTAATTAGCACAGAAAACGCAGAGATAGATGACATAAACGTCATTCGAGATGGAGATCATCTCTTTCTTCTGTGCAGCGATAGTGAAATTTTGAGTTCGTGA 2343 0.4046 MSLSSAKNFFQRFWLDEFQLGNFSHGSFLSNDDLLPSLGARINQETRLRKYIISPFNPQYRAWEMLLVVLVIYSAWICPFEFAFLPYKQDALFIIDNIVNGFFAIDIMLTFFVAYLDNHSYLLVDDPKRIAIRYLSTWFAFDVCSTVPLQSFSFLFTNHSSELGFKAFNMFRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLIAVTLFAVHCAGCFNYLIADRYPDSKRTWIGAMYPNFKEESLWDRYVTAIYWSIVTLTTTGYGDLHAENTREMLFDIAYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVKAASEFASRNHLPHRIQDQMLSHICLRFKTEGLKQQETLNDLPKAIRSSIAHHLFFPVVQKVYLFQGVSHDFLFQLVSDMEAEYFPPKEDVVLQNESSTDLYVLVSGAVDLIRYIDGHDQVLGKTVAVDAFGEIGVLYGVQQPFTVRTTELSQILRVNKTSLMNVLRANPRDAQIIMDNLLMRSKGPEGFGFEYPCTDSGFVPHEVLQGGNKRGSSSSPECANNSLEHSLTHEGKHTIIRDSETSLSKVTNDDHLVSKYNMIPEDNRRDPHAVTHKGNLDVVEILLERDGNAKNPNAIGWTQKPLVKQPKNKGISDQKMSCENEKTDEFRIAITEPEIPDFQRNGSTRNRKDGIRSINFPLEKVYTKSNSRNLNCPSDREAAMSIKKRVTIHLLKGCRSTSRGQHGKLIILPDSLEELFKVAGEKFGNIGPTKVISTENAEIDDINVIRDGDHLFLLCSDSEILSS* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1648 780 ProSiteProfiles KHA domain profile. 702 780 IPR021789 -
Apr1g1648 780 ProSiteProfiles cAMP/cGMP binding motif profile. 378 497 IPR000595 -
Apr1g1648 780 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 1 780 - -
Apr1g1648 780 PANTHER POTASSIUM CHANNEL AKT1 1 780 IPR045319 GO:0005249|GO:0006813
Apr1g1648 780 SUPERFAMILY Voltage-gated potassium channels 55 301 - -
Apr1g1648 780 CDD CAP_ED 378 491 IPR000595 -
Apr1g1648 780 Pfam KHA, dimerisation domain of potassium ion channel 701 770 IPR021789 -
Apr1g1648 780 PRINTS EAG/ELK/ERG potassium channel family signature 73 80 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr1g1648 780 PRINTS EAG/ELK/ERG potassium channel family signature 96 106 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr1g1648 780 PRINTS EAG/ELK/ERG potassium channel family signature 107 116 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr1g1648 780 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr1g1648 780 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr1g1648 780 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr1g1648 780 SMART cnmp_10 378 495 IPR000595 -
Apr1g1648 780 Pfam Cyclic nucleotide-binding domain 398 482 IPR000595 -
Apr1g1648 780 Gene3D - 61 301 - -
Apr1g1648 780 Pfam Ion transport protein 61 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Apr1g1648 780 Gene3D Jelly Rolls 371 500 IPR014710 -
Apr1g1648 780 Gene3D Helix hairpin bin 302 368 - -
Apr1g1648 780 SUPERFAMILY cAMP-binding domain-like 305 495 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1648 Apr-Chr1 26135509 26140251 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1648 1 775 Ion Channels AT4G18290 59.226 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1648 K21867 - gmx:100811356 1338.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1648 1 26135509 26140251 Apr1g1648 1 26135509 26140251 ECH