Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1625 ATGGAGGAGAATGAGATTCAAGCACAGGCGTGTAAGTTTCCAAGGGTTGGAAATGGCAGAAACGAGTCAAACAAGATAGGCTCCGGCAGAGGGAGTGACCAATACCAAGATGAGGAAGAAGATGGAGAGCTAAGAAGAAGAGGTAGTGGTGGTGGTGGTGGAGGTGGAGGTGGAGGTGGAGGAACTGATGGTAGCACAAACCATTTCCAAAGTGGTTGGCATCACTCTTCAAGAATCATAAGGGTATCTAGAGCTTCTGGTGGCAAAGATCGACACAGCAAGGTCATGACTTCAAAGGGTTTAAGAGACAGAAGGGTTAGGCTCTCTGTGACCACAGCTATTCAGTTCTATGACCTTCAAGACCGATTGGGTTATGACCAACCTAGCAAAGCTGTGGAGTGGCTAATTAGAGCTGCTGCAGATGCTATTTCTGAGCTTCCTTCTCTTAATAACCCTTTCCCTGATACCCCTAAACAACTGAGTGATGAGAAAAGGCCAAGTGATCAACAAGGCTTTGATGATGCAGATGGTGATACTAATTATCAGCAGAACCAAAGCCAGAACCTTTCTCTGTCCAAGTCAGCTTGTAGCAGCACTTCTGAGACAAGCAAAGGCTCTGGCTTGTCCCTCTCAAGGTCTGAGAACCGTGTGAAGGCGAGGGAGAGGGCAAGGGAAAGAGCGAAGGAGAAGGAAAAAGAGAAAGAGAGTGACTCTAGCATTGCACATCATCACCATAGTGTGAACCACCCCATGTCTCACACTGCTTCTTTCACTGAGCTTCTCACTGGTAGGATTGGTAGTACAGTAACAGTTCCCACAACTACAAGTCCTAATGGATCAGTTCATCAGATCCATGGTGGTGATGAGGGTAACCTATTCAACAAGGGAACAACACCAATGGCATCCACAAGGCAACATTGGTCTTCAACTGTAACACCTATGGACTACTTCAGTTCAGGCCTTTTGGTGGGGCCTTCTTCATCTTCAAGAACTCATCACCAATCTTCTTCTGGGTTCTCAGGACAAATCCAACTGGGACATACCCTTCCTATTTCACCATTCAGTGGTGACAACAACTCTGATCAGATGCAGCACTTCTCTTTCATGCCTGAACATCTTATTCCAGCTGCGGTTACTTCTTCTCATCCAAGTGGGAGTGACTATAATCTCAACTTCACCATATCTTCGGGCCTTGCTGGTTACAATAGGGGGACCCTTCAGTCCAATTCTCCATCTCTTTTGCCTCATCAGAGGTTTCAACCTATAGACGGATCATCCAATCTTCCTTTCTTTATCGGAGCTCCTGCTCCTGCTTCTGCTCCTCCAACCATGGACAACAACAACCATCACCACCTTCAGTTCTCACCTGTCTTCGATGGTCGCTTGCAACTTTGCTATGGCGATGGAAACCGCCATTCAGACCACAAGGGCAAAGCCAAGAACTAA 1446 0.4689 MEENEIQAQACKFPRVGNGRNESNKIGSGRGSDQYQDEEEDGELRRRGSGGGGGGGGGGGGTDGSTNHFQSGWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIRAAADAISELPSLNNPFPDTPKQLSDEKRPSDQQGFDDADGDTNYQQNQSQNLSLSKSACSSTSETSKGSGLSLSRSENRVKARERARERAKEKEKEKESDSSIAHHHHSVNHPMSHTASFTELLTGRIGSTVTVPTTTSPNGSVHQIHGGDEGNLFNKGTTPMASTRQHWSSTVTPMDYFSSGLLVGPSSSSRTHHQSSSGFSGQIQLGHTLPISPFSGDNNSDQMQHFSFMPEHLIPAAVTSSHPSGSDYNLNFTISSGLAGYNRGTLQSNSPSLLPHQRFQPIDGSSNLPFFIGAPAPASAPPTMDNNNHHHLQFSPVFDGRLQLCYGDGNRHSDHKGKAKN* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1625 481 MobiDBLite consensus disorder prediction 32 47 - -
Apr1g1625 481 ProSiteProfiles TCP domain profile. 88 146 IPR017887 -
Apr1g1625 481 MobiDBLite consensus disorder prediction 214 244 - -
Apr1g1625 481 MobiDBLite consensus disorder prediction 173 213 - -
Apr1g1625 481 MobiDBLite consensus disorder prediction 146 252 - -
Apr1g1625 481 MobiDBLite consensus disorder prediction 158 172 - -
Apr1g1625 481 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 481 IPR005333 GO:0003700
Apr1g1625 481 MobiDBLite consensus disorder prediction 1 76 - -
Apr1g1625 481 ProSiteProfiles R domain profile. 213 230 IPR017888 -
Apr1g1625 481 Pfam TCP family transcription factor 87 233 IPR017887 -
Apr1g1625 481 Coils Coil 210 237 - -
Apr1g1625 481 PANTHER TRANSCRIPTION FACTOR TCP24 1 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1625 Apr-Chr1 25866572 25877692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1625 66 481 TCP Transcription Factor Family AT4G18390 44.000 2.66e-78 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Apr1g1625 TCP 5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1625 - - gmx:100787772 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1625 1 25866572 25877692 Apr1g1625 1 25866572 25877692 ECH