Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1623 ATGAGTGGGCGTCACTCTGGAATGAGCTCGGAGACCGTGAATTCCACCTCAATGAGCAGCGAAAGCATTTGCAGCACCAGCTTCAGCCGTCTCTCCTTCGACCTCCTCCCTTCCTCCTCTTCGCCGGAGAGCCTCTCCATCAAGCCCCACCGCTCCTCCGACTTCGCCTACTCCGCCATCCGCTCCGCCACCTTCCGCCGCAAGGCCGGCCTCACCTTCCGCGACTTCCACCTCCTCCGCCGCATCGGTGCCGGCGACATCGGCACAGTCTACCTCTGCCGCCTCCGCGACTCCGCCGTCGACGACTTCGACGACGACCCCGCTTGCTTTTACGCCATGAAGGTGGTCGACAAGGAAGCCGTGGCTCTGAAGAAAAAATCTGAGCGAGCAGAAATGGAGAGAAAGATTCTGAAGATGCTGGACCACCCTTTTCTCCCTACACTCTACGCCGAGTTCGAAGCTTCTCATTTTTCTTGCATTGTCATGGAGTTTTGTTCCGGTGGCGATTTGCACTCTCTCCGACACAAACACCCTAACAACCGCTTCTCTCTCTCCTCTGCCAGGTTTTACGCGGCTGAAGTTCTGGTTGCGTTGGAGTACCTGCACATGCTTGGAATCATCTACAGGGATCTCAAGCCAGAAAACGTGTTGGTCAGATCCGACGGTCACATCATGCTCTCTGATTTCGATCTCTCTCTATGCTCCCATGCAATCCCAGCCGTTGAATCGCACGATTACTCGCCAGATCCTGCATTCCCACACGTGCTACCCTACACTCGCCAGCAGTCTACACCTTTCTCTTGTCTCTCGAACCGCGTGTTCCGCTCCAGGAAAGTGCAGACTCTTCAATCGAACCGGCTCTTTGTGGCTGAACCTGTGGGGGCACGGTCATGTTCTTTCGTGGGGACGCACGAGTACGTGTCACCGGAGGTTGCCTCTGGGAACTCACACGGCAACGCCGTGGACTGGTGGTCGTTCGGGATATTCATCTACGAGATGGTGTACGGTCGCACGCCCTTCGCTGCTCCATCCAACGAGTCTACGCTGCGCAACATCATAAAGAAGCCACTCGCCTTTCCTACTGCCACGCCCGCTAGCACGCTTGACATGCACGCGCGAGACCTCATCTCCGGGTTGCTTATCAAGGACCCGAACCGCAGGCTCGGGTCGAAGCGAGGCGCTGCGGACGTCAAGAAGCACCCCTTCTTCGCAGGGCTTAACTTGGCGCTCATTCGGATGGTGACGCCTCCGGAGGTTCCGTCCCTGAAAAGGAACAAAACGACGCCGTTGTCGAACGTTAACGATAACGATAACGGGAACAGAAATAACAGTAGGCAACAGGCGACGGCGTTTGATTACTTTTGA 1365 0.5641 MSGRHSGMSSETVNSTSMSSESICSTSFSRLSFDLLPSSSSPESLSIKPHRSSDFAYSAIRSATFRRKAGLTFRDFHLLRRIGAGDIGTVYLCRLRDSAVDDFDDDPACFYAMKVVDKEAVALKKKSERAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKHPNNRFSLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSHAIPAVESHDYSPDPAFPHVLPYTRQQSTPFSCLSNRVFRSRKVQTLQSNRLFVAEPVGARSCSFVGTHEYVSPEVASGNSHGNAVDWWSFGIFIYEMVYGRTPFAAPSNESTLRNIIKKPLAFPTATPASTLDMHARDLISGLLIKDPNRRLGSKRGAADVKKHPFFAGLNLALIRMVTPPEVPSLKRNKTTPLSNVNDNDNGNRNNSRQQATAFDYF* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1623 454 MobiDBLite consensus disorder prediction 421 454 - -
Apr1g1623 454 Gene3D Phosphorylase Kinase; domain 1 74 164 - -
Apr1g1623 454 Gene3D Transferase(Phosphotransferase) domain 1 165 232 - -
Apr1g1623 454 Pfam Protein kinase domain 76 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1623 454 Pfam Protein kinase domain 297 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1623 454 SMART serkin_6 76 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1623 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Apr1g1623 454 MobiDBLite consensus disorder prediction 420 454 - -
Apr1g1623 454 Gene3D Transferase(Phosphotransferase) domain 1 296 421 - -
Apr1g1623 454 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 3 452 - -
Apr1g1623 454 PANTHER FLIPPASE KINASE 1-RELATED 3 452 - -
Apr1g1623 454 CDD STKc_phototropin_like 74 420 - -
Apr1g1623 454 Coils Coil 113 133 - -
Apr1g1623 454 SUPERFAMILY Protein kinase-like (PK-like) 56 432 IPR011009 -
Apr1g1623 454 ProSiteProfiles Protein kinase domain profile. 76 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1623 Apr-Chr1 25799519 25801131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1623 8 454 AGC Kinase Gene Family AT2G34650 66.370 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Apr1g1623 Pkinase 5.7e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1623 - - gmx:100795536 711.835