Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1619 ATGGGGGATCTGGAGAGAATGGGCAAAGAACTCAAATGTCCCATTTGTTGGAGTTTGCTCGATTCTGCAGTTTCACTTACCTGCAATCATCTTTTCTGCAACTCATGTATATTCAAGTCAATGAAATCAGCCTCCACTTGTCCTGTCTGTAAAATACCTTTTACTCGTCGTGAGGTTCGCCCAGCTCCGCACATGGATAACTTGGTTAGCATCTACAAAAACATGGAAACTGCTTCCGGGATAAGTTTATTTGTCACACAAAATGTACCTGTTACTAAATTATCAGATGAAGAAAAGCAATGTGAGGGTGATGCCGCATATGTAAAGGCGGAAGCTGGTGAAGCTCCTAAAAATCATGCACAGGAGAAAAAAATCCTGAAGAAGTCAAGGAAGAAGACTCAGACCAGCATGAAAAGTTCAGGTTCTGACTCTGCAAAACCTTCTTTTCCAGCAAAGAAAAGGGTTCAGGTGCCCCAAAATCTTCTTTCTGAGACTCCATTAAAAAGTTTGAAGGCTCTTAACAAAGGGGGAATAGAACGGGCTTCGGTGATGGAAAATGAAAGGCCTCTTCAAAGTGAAAAACACGATCGTGTTCTTCCACCTTTCTTTTGGTTAAGAGAGGAAAAAGAAGGTGAAAAATCAAGTCAACACACTGATGAGGATCAAACTATTGATGACTTAACTCCAAATCCCCCTTCATTCAGTGATCTCAAGGACTCGGATGATGAATACCCTTCTAATGTGGCCCCATTAGATGAGGTGCAAAATAAAACCTCTGTTGATTTATTTGATAGTGAGATGTTTGAATGGACACAAAGGCCCTGCTCCCCTGAATTATTTTCAAGTCCCTCCAAAATCCAGGTCATGGACACTGCTGAGATTGATGATAATCGAGAGGGAATGGTGGCTGCCTCACAAGATTTGGAAGCAAATAATTCAAGTGCTGATGCTGGCAACATAACTTTTGAGAATTTCAAAGAAGGAAATAGATTGGTTGATGTGTTACCACTGGGTGTGTCTACTCAGATTAGAAGTTCTGATGATCTAAATGTAATAAAGAAGTCTACAAGGAGAAACAGGAAGGGTAGGGAGAAAACTAAGCTAGAACAGATTGGGAAACAGAAAAATTCAATTGATCAAATGGATTCTGATTCAAATATATCATTAAAAGTCACTGGAGAGCAAGCATTGGACTATAATAACAGACCATCAAACCTGCGGAAGACTAATAGAAGGGGCAAGAGGGTTTGTTTCAATACAAGTACAAGTCAGACGCCTCTAACTGCTTGTACAGTCTCTAATGTATTAGGAGTTCTAAGCAATGATGAAATGCAAATGGCTAAAAGTTCATGTACTTCAACATGTGAACAAGAAAATGGGAAGCATTGTCCTGAAGAGATTGGTGGAAAAAGGCAGAAGAAAAGATCTGGAAAACAAAAGATGGATTATGTGCATGTGCAGGACCTAGCTGAAGATTTATCTTCATTGCAGAACCAAACCAATGAGTTTGCTGGTTCTGCTTCATCCATTTTCAGTCTGCAGATGGATAAGAATGGAAAGACCTCTAATAGCAGGCAAAGCAAAAGCAAGTTTTCCAGAAAATCTGTGTCTTGTGGTAAAGATTTGAGAACTAGTAAGAGGTCAAAACTTTCCTCTCATTGTATCTTTAAGGCTAAAGACTGTGAAGAAATTCAACCTGATGAAAGCATTTGTCAAGCTCCAGATAATTATATGTCAAAAGAAAAATATTGTCCTTTGATGGATGAAACATTTTTAAAAAAATGTGAGAACCATGTCAAAAAGTATCAATGTGTCTTCTGTCTCTCAGCAGAAGAATCAGAGGCTTCTGGCCAGATGGTGCACTACTTTGATGGCAAGCCTGTAACTGCAGATTATGAAGGGGGATCTAAAGTCACACATTGTCACAGGAACTGCACAGAATGGGCCCCCAATGTGTATTTTGAAGGTGATAATGCCATAAATCTTGAAGCTGAAATAAGTAGAAGTCGGAGAATTAAATGTAGTTTTTGTGGACTTAAAGGGGCTGCACTTGGTTGTTATGAGAAAACTTGTCGCCGGAGCTTTCATGTTCCTTGTGCCAAGTGGACTTCTCAATGTCGATGGGATATGGAAAACTTCGTCATGTTATGCCCTCTGCATACTTCCTCCTTATTGCCCTGTGAAAAAAGTTCAGGATCCCAAAAAAGGAACAAATGCACAGCTAGAGAGGGCAATAACCGTGGGGGTAAACATGATGCTGCAAGCCAAAGTCGGACTGTTCAGAGATCATACAAGAAAATTGTACTATGTTGTTCTGGTCTATCCGTACAGGAGAGGGAAATTGTCTCTGAATTTGAAAGAGTATCCAAGGTTACAGTTTTGAAAAATTGGGATTCAAATGTCACCCATGTTATAGCATCAACGGATGAAAATGGGGCATGCAGAAGGACCCTCAAAGTATTGCTGGGTATCCTGGAGGGAAAGTGGATTCTCAATGTTGAGTGGGTCAGAGCTTGCATGAAGGGAATGAATCCTGTTGATGAGGAGGGTTATGAAATTAACGTTGACATCCATGGAATCAGGGATGGTCCTCGGCTTGGACGATTGAGAGTATTGAACAAGAAACCAAAGCTTTTTGATGGCTACAAGTTCTATTTTATGGGAGATTTTATACCTTCGTACAAGGGTTATCTGCAAGACCTTGTGGTGGCTGCTGGAGGGACAATTCTCCATAGAAAACCAGTGTCTGCTGACCAAGAATCAATAGCATCTGATACGCATCCATACCAAACCCTTATTATTTACAGCCTAGAGCTTCCTGATAAATGCATTCCTTCAAGAAGGGATACGATTTTCGGCCAAAGGCGACATGATGCGGATGTTCTGGCAAGCTCTACAGGTTCAAAGGTAGCGAGTAATATATGGATTCTGGATTCAGTTGCAGCCTGCAAGCTGCAAAGCCTTGCTCAATAA 2973 0.4073 MGDLERMGKELKCPICWSLLDSAVSLTCNHLFCNSCIFKSMKSASTCPVCKIPFTRREVRPAPHMDNLVSIYKNMETASGISLFVTQNVPVTKLSDEEKQCEGDAAYVKAEAGEAPKNHAQEKKILKKSRKKTQTSMKSSGSDSAKPSFPAKKRVQVPQNLLSETPLKSLKALNKGGIERASVMENERPLQSEKHDRVLPPFFWLREEKEGEKSSQHTDEDQTIDDLTPNPPSFSDLKDSDDEYPSNVAPLDEVQNKTSVDLFDSEMFEWTQRPCSPELFSSPSKIQVMDTAEIDDNREGMVAASQDLEANNSSADAGNITFENFKEGNRLVDVLPLGVSTQIRSSDDLNVIKKSTRRNRKGREKTKLEQIGKQKNSIDQMDSDSNISLKVTGEQALDYNNRPSNLRKTNRRGKRVCFNTSTSQTPLTACTVSNVLGVLSNDEMQMAKSSCTSTCEQENGKHCPEEIGGKRQKKRSGKQKMDYVHVQDLAEDLSSLQNQTNEFAGSASSIFSLQMDKNGKTSNSRQSKSKFSRKSVSCGKDLRTSKRSKLSSHCIFKAKDCEEIQPDESICQAPDNYMSKEKYCPLMDETFLKKCENHVKKYQCVFCLSAEESEASGQMVHYFDGKPVTADYEGGSKVTHCHRNCTEWAPNVYFEGDNAINLEAEISRSRRIKCSFCGLKGAALGCYEKTCRRSFHVPCAKWTSQCRWDMENFVMLCPLHTSSLLPCEKSSGSQKRNKCTAREGNNRGGKHDAASQSRTVQRSYKKIVLCCSGLSVQEREIVSEFERVSKVTVLKNWDSNVTHVIASTDENGACRRTLKVLLGILEGKWILNVEWVRACMKGMNPVDEEGYEINVDIHGIRDGPRLGRLRVLNKKPKLFDGYKFYFMGDFIPSYKGYLQDLVVAAGGTILHRKPVSADQESIASDTHPYQTLIIYSLELPDKCIPSRRDTIFGQRRHDADVLASSTGSKVASNIWILDSVAACKLQSLAQ* 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1619 990 CDD BRCT_Bard1_rpt1 767 841 - -
Apr1g1619 990 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 85 IPR013083 -
Apr1g1619 990 SMART ring_2 674 720 IPR001841 -
Apr1g1619 990 SMART ring_2 13 50 IPR001841 -
Apr1g1619 990 ProSiteProfiles Extended PHD (ePHD) domain profile. 601 721 IPR034732 -
Apr1g1619 990 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 598 723 IPR013083 -
Apr1g1619 990 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Apr1g1619 990 Gene3D BRCT domain 763 869 IPR036420 -
Apr1g1619 990 MobiDBLite consensus disorder prediction 730 757 - -
Apr1g1619 990 PIRSF BRCA1 339 572 IPR031099 GO:0006281|GO:0006974
Apr1g1619 990 PIRSF BRCA1 589 712 IPR031099 GO:0006281|GO:0006974
Apr1g1619 990 PIRSF BRCA1 704 990 IPR031099 GO:0006281|GO:0006974
Apr1g1619 990 PIRSF BRCA1 2 326 IPR031099 GO:0006281|GO:0006974
Apr1g1619 990 SUPERFAMILY BRCT domain 876 988 IPR036420 -
Apr1g1619 990 ProSiteProfiles BRCT domain profile. 759 853 IPR001357 -
Apr1g1619 990 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN 3 988 - -
Apr1g1619 990 Pfam PHD-like zinc-binding domain 642 720 - -
Apr1g1619 990 SUPERFAMILY BRCT domain 767 864 IPR036420 -
Apr1g1619 990 MobiDBLite consensus disorder prediction 209 255 - -
Apr1g1619 990 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 3 988 IPR031099 GO:0006281|GO:0006974
Apr1g1619 990 MobiDBLite consensus disorder prediction 112 163 - -
Apr1g1619 990 Pfam Zinc finger, C3HC4 type (RING finger) 12 50 - -
Apr1g1619 990 ProSiteProfiles BRCT domain profile. 874 990 IPR001357 -
Apr1g1619 990 SMART PHD_3 673 721 IPR001965 -
Apr1g1619 990 Pfam BRCA1 C Terminus (BRCT) domain 768 840 IPR001357 -
Apr1g1619 990 MobiDBLite consensus disorder prediction 209 224 - -
Apr1g1619 990 SUPERFAMILY RING/U-box 4 74 - -
Apr1g1619 990 Gene3D BRCT domain 875 983 IPR036420 -
Apr1g1619 990 SMART BRCT_7 876 983 IPR001357 -
Apr1g1619 990 SMART BRCT_7 762 843 IPR001357 -
Apr1g1619 990 ProSiteProfiles Zinc finger RING-type profile. 13 51 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1619 Apr-Chr1 25762742 25768661 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1619 6 87 RAD5 or RAD16-like Gene Family AT5G22750 30.588 2.56e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1619 K10683 - gmx:100804958 1454.88