Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1608 ATGAGACTTTCTTCAGCTGGTTTTAGTCCTCCATCCCAGGAAGGGGAAAAGCGAGTTTTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTCTCTTTACCAGCAGTTGGAAGCCGCGTGGTATACTTTCCACAAGGTCACAGTGAACAAGTGGCTGTTTCAACAAACAAGGAAGTAGATGCCCATATCCCAAACTATCCAAGCTTACCTCCTCAACTTATTTGTCAACTTCATAATATGACTATGCATGCTGATGCTGAGACCGATGAAGTGTACGCACAGATGACCTTGCAACCTCTGAGTCCTCAAGAGCAAAAGGAGGCCTACCTGCCAGCAGAGTTGGGCACTCCAAGTAAACAACCAACAAACTATTTCTGCAAAACTTTGACTGCCAGTGATACAAGCACTCACGGGGGATTCTCTGTACCTCGCCGGGCAGCTGAAAAAGTGTTTCCCCCATTGGATTTCTCCCAACAACCTCCTGCTCAAGAATTGATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGGCACATTTTCCGGGGTCAGCCCAAAAGGCATCTACTTACGACTGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTCGTTGCTGGTGATTCTGTGCTGTTTATCTGGAATGAAAAGAACCAATTGCTTCTTGGTATCCGTCGTGCTAATCGACCACAAACTGTGATGCCTTCTTCAGTGTTGTCAAGTGATAGTATGCACTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACCATTTTCTATAATCCTCGTGCTAGCCCATCAGAATTTGTGATTCCTTTAGCAAAGTACGTAAAAGCTGTGTATCACACTCGAGTTTCAGTTGGTATGCGTTTCAGGATGCTATTTGAAACAGAGGAATCAAGTGTGCGGCGATACATGGGTACAATAACTGGCATTAGTGACCTGGATCCTGTACGTTGGCCAAACTCACATTGGCGCTCGGTCAAGGTTGGCTGGGATGAATCCACTGCTGGAGAGAGGCAACCTAGGGTGTCTCTGTGGGAAATTGAGCCATTAACAACATTTCCTATGTATCCATCTCCGTTCCCACTTAGGCTTAAACGACCATGGCCTCCTGGACTGCCTTCATTCCATGGCATGAAGGATGATGACTTTGGCATAAATTCACCTTTGCTGTGGCTCCGTGACACTGATAGAGGGCTTCAGTCTCTTAATTTTCAGGGGATTGGGGTCAATCCTTGGATGCAGCCAAGATTTGATCCCTCCATGTTGAATATGCAACAAGATATGTTTCAAGCTGCTGCTGTTCAGGACATAAGGAGTGTAGATTCTTCCAAACAGCATCCTGGTTCGTTACTTCAATTTCAGCAACCACAGAACATCCCAAACAGGACTGCTGCTCTAATGCAGGCCCAGATGTTGCAGCAGTCACAACCTCAGCAGATATTTGGAAATAATCAAGAAAACCAGCATCCAACACTCTCTCAGCCTCAAACTCAGGCCCATCTTCAGCAACATATGCAACATCAACACTCGTTCAATAGTCAGCATCATCATCAACACCAGCAACAACTACAACAACAGACACAACAGCAACAGCAAGTGGTAGATAGTCAGCAAATTTCAAGTGCTGTCTCTACAATGTCTCAGTTTGTTTCAGCACCTCAACCTCAATCACCACCTATGCAAGCTATCTCTTCCCTGTGTCAACAGCAAAATTTTTCTGATTCAAATGGGAACCCTGTGACTACTGTTGTCTCTCCACTACACAGTATCTTGGGTTCATTTCCCCAGGATGAAACATCTCACCTTCTGAACCTTACTAGAACAAGCTCTTGGATTCCTGTTCAGAATTCAAGTGCGTGGCCCTCCAAGCGTGTTGCAGTGGATCCTCTCCTTTCTTCTGGAGCATCTCAATGTGTTCTACCTCAGCTGGAACAGCTTGGGCAACCACAGAGTACCATGTCTCCAAATGCTATTACATTACCACCTTTTCCTGGTAGGGAGTGCTCAATTGACCAAGAAGGGAGCAATGATCCACAAAACCATCTTTTATTTGGTGTTAATATAGATCCGTCCTCCCTTCTCATGCCTAATGGGATGTCTGCCATAAAGGGGGTCAACAGCAACGGTGACTCCTCAACGTTGCCATATCAATCTTCTAATTATCTGAATACAACAGGTCCTGATTCTTCATTGAATCATGGAATGACCCACAGCATTGGCGAATCAGGCTTTCTGCAGACACCAGAAAATGCAGGACAAGGAAACCCATTGAATAAAACCTTTGTGAAGGTTTACAAGTCAGGGTCCTTTGGAAGGTCATTGGATATCACTAAATTCAGCAGCTACCATGAGCTGCGTAGTGAGCTTGCCCGAATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCTCTGAGATCAGGCTGGCAGCTTGTATTTGTAGACCGAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCCTGGCCGGAATTCGTAAATAGTGTATGGTGCATCAAGATACTTTCACCTCAGGAAGTGCAGCAAATGGGCACCGGCCTCGAGCTTTTGAGCTCAGTTCCAATTCAAAGGCTCTCAAACGGCATCTGTGATGACTACGTGAGCCGTCAAGACCCAAGAAATTTAAGCAGTGGGATAACAACTGTAGGGTCTTTAGACTACTGA 2703 0.4584 MRLSSAGFSPPSQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNMTMHADAETDEVYAQMTLQPLSPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDFGINSPLLWLRDTDRGLQSLNFQGIGVNPWMQPRFDPSMLNMQQDMFQAAAVQDIRSVDSSKQHPGSLLQFQQPQNIPNRTAALMQAQMLQQSQPQQIFGNNQENQHPTLSQPQTQAHLQQHMQHQHSFNSQHHHQHQQQLQQQTQQQQQVVDSQQISSAVSTMSQFVSAPQPQSPPMQAISSLCQQQNFSDSNGNPVTTVVSPLHSILGSFPQDETSHLLNLTRTSSWIPVQNSSAWPSKRVAVDPLLSSGASQCVLPQLEQLGQPQSTMSPNAITLPPFPGRECSIDQEGSNDPQNHLLFGVNIDPSSLLMPNGMSAIKGVNSNGDSSTLPYQSSNYLNTTGPDSSLNHGMTHSIGESGFLQTPENAGQGNPLNKTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGTGLELLSSVPIQRLSNGICDDYVSRQDPRNLSSGITTVGSLDY* 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1608 900 PANTHER AUXIN RESPONSE FACTOR 1 880 - -
Apr1g1608 900 MobiDBLite consensus disorder prediction 491 547 - -
Apr1g1608 900 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Apr1g1608 900 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 880 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr1g1608 900 ProSiteProfiles PB1 domain profile. 768 852 IPR000270 GO:0005515
Apr1g1608 900 SUPERFAMILY CAD & PB1 domains 767 843 - -
Apr1g1608 900 Pfam AUX/IAA family 762 853 IPR033389 -
Apr1g1608 900 CDD B3_DNA 126 227 IPR003340 GO:0003677
Apr1g1608 900 Gene3D - 125 228 IPR015300 -
Apr1g1608 900 Gene3D - 765 857 - -
Apr1g1608 900 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Apr1g1608 900 Gene3D - 291 363 - -
Apr1g1608 900 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Apr1g1608 900 SMART B3_2 127 229 IPR003340 GO:0003677
Apr1g1608 900 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1608 Apr-Chr1 25656528 25664236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1608 1 480 B3 DNA Binding Superfamily AT1G30330 85.246 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr1g1608 AUX_IAA 3e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1608 - - gmx:100798719 1586.62