Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1607 ATGCCTAAGCAAATCCACGAAATTAAGGATTTCCTTCTCACTGCCCGAAGGAAGGATGCGAGGTCGGTGAAAATCAAGAGGAGCAGAGATGTGGTTAAGTTCAAGGTCCGATGCTCCAAGTACCTCTACACACTTTGTGTGTTCGACCCAGAGAAGGCTGATAAATTGAAGCAATCACTCCCTCCAGGTTTGAGTGTTCAAGACCTGTAA 210 0.4619 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDPEKADKLKQSLPPGLSVQDL* 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1607 69 PANTHER 60S RIBOSOMAL PROTEIN L38 1 69 - -
Apr1g1607 69 Pfam Ribosomal L38e protein family 2 68 IPR002675 GO:0003735|GO:0005840|GO:0006412
Apr1g1607 69 Gene3D - 1 69 IPR038464 -
Apr1g1607 69 PANTHER 60S RIBOSOMAL PROTEIN L38 1 69 IPR002675 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1607 Apr-Chr1 25651846 25653181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1607 1 69 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 94.203 1.07e-43 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1607 K02923 - gmx:100795924 140.584