Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1585 ATGGCTTTTCCAAATCCATCCATGTCAGTTTCTCCACAGAGGAAGATGGGAAGGGGGAAGATTGAGATCAAGCGGATTGAGAACACCACCAATCGCCAAGTCACCTTCTGCAAGCGCAGAAATGGCTTACTCAAGAAGGCATATGAATTATCTGTGCTTTGTGATGCAGAGGTTGCTCTAATTGTCTTCTCTAGCCGTGGCCGTCTCTATGAATATGCTAATAACAGTGTCAAAGAAACTATTGAGAGGTACAAGAAAGCATGTTCAGATTCATCTGGAGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCAGAAAAACTTCGTGCGCAAATTAGTAATCTGCAGAATAACAACAGGCAAATGATGGGTGAGTCTTTAGGCTCTATGAATGCCAAGGACCTTAAAAACTTGGAGACTAAATTAGAAAAAGGAATTAGTAGGATTCGTTCCAAAAAGAATGAGCTGCTATTTGCCGAAATTGAGTACATGCAGAAGAGGGAGATAGACTTGCACAACAACAATCAGCTTCTTCGAGCAAAGATAGCTGAAAGTGAGAGGAGCCAGCATAACATGACTGTGTTGCCGGTAGGCACAAATTATGACTCTATGCAGTCTCAGCAGCAATTCGACTCTCGTGGCTACTTCCAAGTCACTGGTTTACAACCCAATAATCAGTACGCACGGCAAGATCAGATGTCCCTTCAATTAGTGTAA 729 0.4294 MAFPNPSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKETIERYKKACSDSSGAGSASEANAQFYQQEAEKLRAQISNLQNNNRQMMGESLGSMNAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERSQHNMTVLPVGTNYDSMQSQQQFDSRGYFQVTGLQPNNQYARQDQMSLQLV* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1585 242 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Apr1g1585 242 CDD MADS_MEF2_like 17 86 IPR033896 GO:0000977|GO:0045944
Apr1g1585 242 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr1g1585 242 PANTHER AGAMOUSB 10 236 - -
Apr1g1585 242 Coils Coil 102 129 - -
Apr1g1585 242 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Apr1g1585 242 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Apr1g1585 242 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Apr1g1585 242 Coils Coil 139 159 - -
Apr1g1585 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Apr1g1585 242 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Apr1g1585 242 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Apr1g1585 242 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Apr1g1585 242 PANTHER MADS BOX PROTEIN 10 236 - -
Apr1g1585 242 Pfam K-box region 100 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr1g1585 242 Gene3D - 28 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1585 Apr-Chr1 25416785 25423864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1585 14 242 MADS-box Gene Family AT3G58780 68.085 1.13e-108 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr1g1585 K-box 7.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1585 K09264 - gmx:732595 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1585 1 25416785 25423864 Apr1g1585 1 25416785 25423864 ECH
Apr3g2247 3 38178462 38184823 Apr1g1585 1 25416785 25423864 PCT