Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1579 ATGGCAACCATCAGACACAAAGCCATAGGCATTGACCTAGGCACAACCTACAGCTGCGTGGCAGTATGGCAACACAACCACGTTGAAATCATTCCAAACGACCAAGGCAACCGCACAACCCCTTCTTATGTTGCCTTCACCGACACCCAAAGGTTGTTGGGTGATGCTGCCATCAACCGAACCATCAATCCTCACAACACCGTTTTCGACGCCAAACGTCTGATCGGTCGGAGATTCTCTGACAAATCCGTTCAGCAAGACATGAAGTTTTGGCCTTTTAAGGTTGTCCCTGGAATACGAGACAAGCCCATGATTGCGGTCACTTACAAAGGCGAAGAGAAACACCTTGCAGCCGAAGAGATATCCTCCATGGTGTTGTCCAAAATGAAGGAGATCGCTGAAGCCTATTTGGGTCATGAAGTTAAGGACGCTGTTATCACTGTCCCTGCTTACTTCAGCAACTCACAGAGACAAGCCACCAAGGATGCAGGGAAAATCGCTGGTTTGAACGTGATGAGGATCATCAACGAGCCAACCGCAGCTGCTATTGCTTACGGGTTGGATAAGAGGGTGTGGAGAGAGGATGAACAGAACGTGCTTGTGTTTGATCTTGGTGGTGGCACTTTTGATGTTTCATTGGTGACGATTGATGCAGGGATGTTTAAGGTGAAGGCCACGGTGGGAGATACCCATCTGGGTGGCGTGGATTTTGATAACAAATTGGTGAACCATCTGGTGGGTGTGTTTAAGAGGAAGTATAACAAGGACATTAGTGAAAATGCCAAAGCTTTGGGGAGGTTAAGGTCAGCATGTGAGAAAGCTAAGAGGATACTGTCTTCGAGTTCCCAAACCACTATTGAGCTTGACTCTTTATGTGGAGGGATTGATCTAAATGCAACTGTTACGAGGGCGTTGTTCGAGGAATTGAACAAGGACTTGTTCATGAAGTGCATGGAGACAGTAGAGAAGTGTCTCGTTGAGGCAAAGGTTGAGAAAAGGCAAGTGCATGAGTTTGTTCTCGTAGGAGGGTCTACTAGGATTCCAAAGGTTCAACAACTTCTAAAGGACATGTTCCGTGTGAATGGAAGAGTGAAAGAGCTTTGCAAAAGCATCAACCCCGACGAGGCTGTGGCATATGGTGCTGCGGTTCAAGCAGCGATTTTGAGTGGGGAAGGAGACAAGAAAGTGGAGGAGCTGTTGTTACTGGATGTGATGCCACTTAGTCTTGGCATTGAGACTGATGGTGGTGACATGTCAGTGTTGATTCCGAGGAACACCATGATCCCCACCAAGAAGGAGAGCGCTTTCTCTACCTCTTCTGATAATCAAAAAAGTGTGTTGATCAAAGTGTACGAGGGAGAGCGGGCTAAGACAGAGGAAAATTCTCTTCTTGGGAAGTTTGAGCTATCTGGGTTCAGTCCTGCGCCAAGAGGAGTCCCAAATGTCAATGTTTGTTTTGATGTAGATGTTGATGGCATTGTGGAGGTCACCGCGGAAGACAGAAGCACGAGGTTGAAAAAGAAGATCACCATCAGCAACAAGCAGGGAAGGTTGAGCCCGCAAGAGATGAGAAGAATGGTGAGAGATGCTGAGAGGTATAAGGAAGAGGATGAAGAGGTGAAGAAGAAAGTGAGGGCCAAGAACTTGCTTGAAAATTATACTTATGAAATGAGAGACAGAGTGACAAATCTTGCAAAGGCAGTGGAGGAGACCATAGAATGGCTTGACAGAAACCAATTGGCTGAAACTGATGAGTTTGAGTATAAGAAACAGGAGTTGGAAGAAAGGGTCCTCAAAGTTATGTAA 1806 0.4651 MATIRHKAIGIDLGTTYSCVAVWQHNHVEIIPNDQGNRTTPSYVAFTDTQRLLGDAAINRTINPHNTVFDAKRLIGRRFSDKSVQQDMKFWPFKVVPGIRDKPMIAVTYKGEEKHLAAEEISSMVLSKMKEIAEAYLGHEVKDAVITVPAYFSNSQRQATKDAGKIAGLNVMRIINEPTAAAIAYGLDKRVWREDEQNVLVFDLGGGTFDVSLVTIDAGMFKVKATVGDTHLGGVDFDNKLVNHLVGVFKRKYNKDISENAKALGRLRSACEKAKRILSSSSQTTIELDSLCGGIDLNATVTRALFEELNKDLFMKCMETVEKCLVEAKVEKRQVHEFVLVGGSTRIPKVQQLLKDMFRVNGRVKELCKSINPDEAVAYGAAVQAAILSGEGDKKVEELLLLDVMPLSLGIETDGGDMSVLIPRNTMIPTKKESAFSTSSDNQKSVLIKVYEGERAKTEENSLLGKFELSGFSPAPRGVPNVNVCFDVDVDGIVEVTAEDRSTRLKKKITISNKQGRLSPQEMRRMVRDAERYKEEDEEVKKKVRAKNLLENYTYEMRDRVTNLAKAVEETIEWLDRNQLAETDEFEYKKQELEERVLKVM* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1579 601 Pfam Hsp70 protein 8 600 IPR013126 GO:0005524|GO:0140662
Apr1g1579 601 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 395 551 IPR029047 -
Apr1g1579 601 Gene3D - 69 124 - -
Apr1g1579 601 Gene3D Actin; Chain A, domain 4 233 316 - -
Apr1g1579 601 SUPERFAMILY Actin-like ATPase domain 7 189 IPR043129 -
Apr1g1579 601 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 546 597 IPR029048 -
Apr1g1579 601 SUPERFAMILY Actin-like ATPase domain 196 388 IPR043129 -
Apr1g1579 601 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Apr1g1579 601 Gene3D - 190 368 - -
Apr1g1579 601 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 386 571 IPR029047 -
Apr1g1579 601 Gene3D - 9 385 - -
Apr1g1579 601 PRINTS 70kDa heat shock protein signature 7 20 - -
Apr1g1579 601 PRINTS 70kDa heat shock protein signature 35 47 - -
Apr1g1579 601 PRINTS 70kDa heat shock protein signature 144 164 - -
Apr1g1579 601 PRINTS 70kDa heat shock protein signature 207 217 - -
Apr1g1579 601 PRINTS 70kDa heat shock protein signature 371 391 - -
Apr1g1579 601 PRINTS 70kDa heat shock protein signature 398 417 - -
Apr1g1579 601 PRINTS 70kDa heat shock protein signature 479 495 - -
Apr1g1579 601 ProSitePatterns Heat shock hsp70 proteins family signature 2. 201 214 IPR018181 -
Apr1g1579 601 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 4 595 - -
Apr1g1579 601 PANTHER HEAT SHOCK PROTEIN 70KDA 4 595 IPR013126 GO:0005524|GO:0140662
Apr1g1579 601 Coils Coil 523 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1579 Apr-Chr1 25312694 25315026 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1579 1 594 Calmodulin-binding Proteins AT1G16030 68.309 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1579 K03283 - gmx:121173324 1005.74