Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1578 ATGTCAATGAGGAAAGGAAAAGCCATAGGCATAGACTTGGGAACATCCTACAGCTGCGTGGCAGTGTGGCAAAACAACAAAGTTGAAGTCATTCCAAACGAGCAAGGCAACCGCACCACCCCTTCTTGTGTTGCCTTCACCCAAACCCAAAGGTTGTGGGGTGATGCTGCCATGAACCACCGAACCAAGAATCCACACAACACCGTTTTCGACGCCAAACGTTTGATCGGTCGTAGATTCTCCGACAAATCCGTTCAACAAGACATGAAGCTTTGGCCTTTTAAGGTTGTCTCTGCAAGCCGAGACAAGCCCATGATTGCGGTTACTTACAAAGGCGAAGAGAAACGTTTTGCACCCGAAGAGATATCTTCCATGGTGTTGCTTAAAATGAAAGAGATCGCTGAAGCGTATTTGGGTCACTCAGTGAGGGATGCTGTTATCACTGTCCCTGCTTATTTCAACAACTCACAGAAGCAAGCCACTAAGAATGCAGGGAAAATTGTTTGTTTAAACGTTCTGAGGATGATCAACGAGCCAACTGCAGCTGCTATTGCTTACGGGTTGGGCAAGAAGGGGTTGAGAGAGGGTGAAAAAAATGTGCTTGTGTTTGATCTTGGTGGTGGCACTTTTGATGTTTCGTTAGTGATGATTGATGAAGGAAAGTTTAACGTTAAGGCCACGGTGGGAGATGCCCATTTGGGTGGTGTAGATTTCGATAACAGATTGGTGAACCATTTGGTGGGTGTGTTTAAAGAGAAGCACAAGAAGGACATGAGTGAGAATGCCAAAGCTCTTGAGAAATTAAGGTCAGCGTGTGAGAGAGCTAAGAGGATCCTCACTTGGAGTTCAGAAACTAGTATTGAGCTTGACTCTTTATATGAAGGAGTTGATCTGTATGCCACTCTTACTAGAGAAAAATTCGAAGAATTGAACGAGGACTTGTTCATCAAATGCATGCAGATTGTGGAGAAGTGTCTTGTTGACGCAAAGGTTGACAAAACCCAAGTCCATGAGATCGTTCTTGTTGGTGGGTCTAGTAGAATTCCCAAGGTACAACAGCTTTTGAAGGACAAGTTCAGTGTGAGTGGGAGAGTGAAAGAGCTCTGCAACAGCATAAACCCTGATGAATCTGTTGCATATGGTGCTGCAGTTCAAGCAGCAATCTTGAATGGTGAGGGAGACAAGAAAATACAGGAGTTGTTGTTGCTTGATGTGATGCCATTTAGTCTTGAGGTTGACACTGGGGGTGGTGTGATGTCAGTGCTGATTCCTAAGAACACCGTGATCCCAGTCAAGAAGGAGAGGGTTTTCTCCACCTCCTCTGATAATCAAAAATGCATTTTGGTCAAAGTGTTGGAGTGA 1362 0.4486 MSMRKGKAIGIDLGTSYSCVAVWQNNKVEVIPNEQGNRTTPSCVAFTQTQRLWGDAAMNHRTKNPHNTVFDAKRLIGRRFSDKSVQQDMKLWPFKVVSASRDKPMIAVTYKGEEKRFAPEEISSMVLLKMKEIAEAYLGHSVRDAVITVPAYFNNSQKQATKNAGKIVCLNVLRMINEPTAAAIAYGLGKKGLREGEKNVLVFDLGGGTFDVSLVMIDEGKFNVKATVGDAHLGGVDFDNRLVNHLVGVFKEKHKKDMSENAKALEKLRSACERAKRILTWSSETSIELDSLYEGVDLYATLTREKFEELNEDLFIKCMQIVEKCLVDAKVDKTQVHEIVLVGGSSRIPKVQQLLKDKFSVSGRVKELCNSINPDESVAYGAAVQAAILNGEGDKKIQELLLLDVMPFSLEVDTGGGVMSVLIPKNTVIPVKKERVFSTSSDNQKCILVKVLE* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1578 453 ProSitePatterns Heat shock hsp70 proteins family signature 3. 339 353 IPR018181 -
Apr1g1578 453 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 4 453 - -
Apr1g1578 453 Gene3D - 9 386 - -
Apr1g1578 453 Gene3D - 70 125 - -
Apr1g1578 453 PANTHER HEAT SHOCK PROTEIN 70KDA 4 453 IPR013126 GO:0005524|GO:0140662
Apr1g1578 453 Coils Coil 255 275 - -
Apr1g1578 453 Gene3D Actin; Chain A, domain 4 234 317 - -
Apr1g1578 453 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Apr1g1578 453 SUPERFAMILY Actin-like ATPase domain 195 390 IPR043129 -
Apr1g1578 453 Gene3D - 191 369 - -
Apr1g1578 453 Pfam Hsp70 protein 8 452 IPR013126 GO:0005524|GO:0140662
Apr1g1578 453 SUPERFAMILY Actin-like ATPase domain 7 190 IPR043129 -
Apr1g1578 453 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 453 IPR029047 -
Apr1g1578 453 ProSitePatterns Heat shock hsp70 proteins family signature 2. 202 215 IPR018181 -
Apr1g1578 453 PRINTS 70kDa heat shock protein signature 7 20 - -
Apr1g1578 453 PRINTS 70kDa heat shock protein signature 35 47 - -
Apr1g1578 453 PRINTS 70kDa heat shock protein signature 57 65 - -
Apr1g1578 453 PRINTS 70kDa heat shock protein signature 145 165 - -
Apr1g1578 453 PRINTS 70kDa heat shock protein signature 208 218 - -
Apr1g1578 453 PRINTS 70kDa heat shock protein signature 372 392 - -
Apr1g1578 453 PRINTS 70kDa heat shock protein signature 399 418 - -
Apr1g1578 453 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 396 453 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1578 Apr-Chr1 25300985 25304114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1578 1 453 Calmodulin-binding Proteins AT1G16030 68.874 0.0 662