Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1573 ATGGCTGATAATTCAGCAAGCAATGGAAGCCACGAGGTGGTTTTACATGTAAACGGCGCCTCCAAAAAGCGTGAAGACTCATCAAGCATTCAGGTCTATGCGCCTTTTTTGCAGAAGTTGGTGGCAGAGGTGGTGGGGACGTACTTCTTGATATTTGCTGGGTGTGGTTCGGTGGTAGTGAACCTTGACAAGGACAAGGAGGTGACACATCCTGGGATTTCCATTGTTTGGGGACTCACTGTTATGGTATTGGCATATTCTCTTGGTCACATCTCTGGTGCTCATTTCAACCCTGCCGTTACCATTGCTCATGCTACCACCAGAAGGTTTCCCTTGAAGCAGGTACCGGCTTATGTTGTAGCTCAGATTATTGGATCAACCCTTGCTAGTGGAACTCTCAGACTTTTATTCAATGGGAAGAATGACCATTTTTCGGGAACACTACCGGCTGGTTCTAATCTTCAAGCTTTTGTGGTTGAATTCATAATCACTTTCTACCTCATGTTCGTCATTTCTGGAGTAGCCACTGATAACCGAGCGATTGGTGAGTTGGCAGGGCTTGCTGTAGGGTCTACCGTACTACTAAATGTGATGTTTGCCGGGCCAATCACTGGAGCTTCAATGAACCCAGCAAGAAGCTTGGGGCCTGCTATTGTGCACCATAAGTACAGTGGAATATGGATATATTTGCTGTCACCAACTCTAGGAGCTGTAGCGGGTACATGGACCTACAATTTCATTAGGTACACAAATAAGCCTGTGCGTGAGATCACCATGAGTGCCTCTTTCCTCAAAGGAGCAGAACGTGGAAATGGAGCTCAGTGA 825 0.4667 MADNSASNGSHEVVLHVNGASKKREDSSSIQVYAPFLQKLVAEVVGTYFLIFAGCGSVVVNLDKDKEVTHPGISIVWGLTVMVLAYSLGHISGAHFNPAVTIAHATTRRFPLKQVPAYVVAQIIGSTLASGTLRLLFNGKNDHFSGTLPAGSNLQAFVVEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVHHKYSGIWIYLLSPTLGAVAGTWTYNFIRYTNKPVREITMSASFLKGAERGNGAQ* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1573 274 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr1g1573 274 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 267 - -
Apr1g1573 274 Pfam Major intrinsic protein 35 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr1g1573 274 PANTHER AQUAPORIN NIP2-1 1 267 IPR034294 -
Apr1g1573 274 TIGRFAM MIP: MIP family channel proteins 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr1g1573 274 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr1g1573 274 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr1g1573 274 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr1g1573 274 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr1g1573 274 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr1g1573 274 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr1g1573 274 SUPERFAMILY Aquaporin-like 32 256 IPR023271 -
Apr1g1573 274 Gene3D Glycerol uptake facilitator protein. 3 258 IPR023271 -
Apr1g1573 274 ProSitePatterns MIP family signature. 95 103 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1573 Apr-Chr1 25272841 25275218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1573 38 274 Major Intrinsic Protein MIP AT5G37820 61.765 8.63e-103 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1573 K09874 - gmx:100812577 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1573 1 25272841 25275218 Apr1g1573 1 25272841 25275218 ECH
Apr3g2237 3 38112214 38114122 Apr1g1573 1 25272841 25275218 PCT