Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1566 ATGGAGGAAGCTCAGGGCAGTTCCAGTTCCTTGCCTCCTTTCCTCACAAAGACTTACGAAATGGTGGACGATCCTACCACCAATTCCATTGTCTCTTGGAGTGCCTCCAATAAAAGTTTCATTGTTTGGAACCCACCAGAATTTTCAAGGGATTTGTTACCCAGATTCTTTAAGCACAATAACTTCTCAAGTTTTATCAGACAGCTAAACACTTATGGGTTTAGAAAGATTGACCCTGAACAATGGGAATTTGCAAATGATGATTTTATAAGAGGTCAACCACATCTCTTGAAGAATATTCATAGGCGCAAACCTGTTCATAGCCATTCTTTGCAGAATCTTCAAGGTCAAGGGGCTGTGCCTCTTACGGAATCAGAACGGCAGAGTTTCAAAGATGAGATAGAGAGGCTTAAACATGAGAAAGAACGACTTCTTCTGGAGTTGCAGAGTCATGAACAGGAGGGGAAAATGTATGAGATACAATTACAATGCTCAAAGGATCGTTTGGAAAAGTTGGAAAATAAGCAACAACATATGCTTTCTTCTGTTTCTCAAATGTTGCAAAAACCTGGGATTGCCTTGAATCTCTTGCAACTGACTGAAAGCATGGATAGAAAACGAAGGTTGCCAAGAGGTGGTCTCTTTGGTGACGATGCTAGCATTGAAGATCATATGGAAACTTCGCAAATATTACCAAGAGAAAATGAAGAGAGTGCCTCAACTTTCACATTAAGCGTGGAGCGATTGGATCTGCTTGAGTCATCCATGGTGTTTTGGGAGAATATTGCTCATGAAGTTGGTGGTGATACCTTTGTTCAAAGTCATTCAAACTTGGGTTTTGATGAGTCTACAAGTTGTGCAGATAGTCCAGCCATATCTTGTGTGCAACTAGATGTTGAAATTCAGCCTAAGTCACCTGGAATTGACATGAATTCTGAGCCAGCCGTGGCTGCTGCTTCTGATATTGATTCATCAAAAGAACAACCTGGGGTAACAGCTCCTGTGGTTACTGGTGTTAATGATGTATTCTGGGAACAATTCTTGACCGAGAATCCTGGTTCAACTGAAATGCAGGAAGCGCAATCTGAAAGAAAGGATTCTGATGGCAGAAATGATGGTAAAACTAGTGAACTTAGCAGATTTTGGTGGAACATTAGGAATGTAAATAACCTTCCAGAACAGATGGGGCATTCTTAG 1197 0.411 MEEAQGSSSSLPPFLTKTYEMVDDPTTNSIVSWSASNKSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQWEFANDDFIRGQPHLLKNIHRRKPVHSHSLQNLQGQGAVPLTESERQSFKDEIERLKHEKERLLLELQSHEQEGKMYEIQLQCSKDRLEKLENKQQHMLSSVSQMLQKPGIALNLLQLTESMDRKRRLPRGGLFGDDASIEDHMETSQILPRENEESASTFTLSVERLDLLESSMVFWENIAHEVGGDTFVQSHSNLGFDESTSCADSPAISCVQLDVEIQPKSPGIDMNSEPAVAAASDIDSSKEQPGVTAPVVTGVNDVFWEQFLTENPGSTEMQEAQSERKDSDGRNDGKTSELSRFWWNIRNVNNLPEQMGHS* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1566 398 MobiDBLite consensus disorder prediction 349 376 - -
Apr1g1566 398 MobiDBLite consensus disorder prediction 359 375 - -
Apr1g1566 398 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr1g1566 398 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr1g1566 398 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr1g1566 398 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr1g1566 398 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr1g1566 398 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr1g1566 398 Gene3D - 6 104 IPR036388 -
Apr1g1566 398 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 385 - -
Apr1g1566 398 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 385 IPR027725 -
Apr1g1566 398 Coils Coil 120 175 - -
Apr1g1566 398 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1566 Apr-Chr1 25199979 25202629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1566 7 397 HSF AT4G18880 55.611 4.45e-130 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr1g1566 HSF_DNA-bind 6.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1566 K09419 - gmx:100820566 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1566 1 25199979 25202629 Apr1g1566 1 25199979 25202629 ECH
Apr1g1566 1 25199979 25202629 Apr3g2235 3 38085824 38088561 ECH
Apr3g2235 3 38085824 38088561 Apr1g1566 1 25199979 25202629 PCT