Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1564 ATGGCTTCAGGGGCAATTTTCTCGTCGCTCCGGCGGAGAAGGTCGCCGACGTTGGAAGCGTTTCTGGCCCCCGTTGACCTGAGCAACGTGGCGTTGGTTCAGACCCTTGTCTCGGTTGCGGGCGAGCTTGTATCGTGCTTTTCGAAGAGTTCTTTCTTCTTTCAGCGCAAGAACTCGCGGTCTTTGATACGAAAAGTTGAGGTTTTCCAGTTGCTTTTGGAGTATTTGAGTGATTCAGGTTCGTATCTTCCACCTACCGCAGTGCTTTGTCTCAAGGAGCTCTACCTTCTTCTGTACCGGTCCAAGATTCTGCTTGATTATTGCGCCCAATCGAGTAAGTTGTGGCTTTTGCTTCAAAACCATTCCATTTCTGGTCACTTCCATGATTTGAACCAAGAGATTTCAACCCTTTTGGACGTTTTTCCAATTAAGGATGTTGAGTTGAGTAAGGATGTTAGGGAGCAGGTTGAGCTTTTGCAGAAGCATTCAAGGAGCGCTAAGCTTTTTATAGATATGAAAGATGATGCCCTCAGGGTTCGCTTTTTCTCTTTTCTTGATGAGTTTGAGAACGGAAGGATTCCTGATTCTGCTGAATTTCAATCTTTCTATGTTGAGGAGTTGCAAATTTTGGATGCTACCAGTTGTAGGAGTGAAATTGAGGCTTTGGAGGAGCAGATTGTTAATCATGAGGGTGACATTGAGCCTACTATTTCTGTGCTTAATGGCTTGGTGGCTATGACAAGGTATTGCAGGTTTTTGCTCTTTGGCTTTGAGGAAGATGAGCTTGATTTGGAAAATGGAAGTCAGAAGAAACCTAAAAGGAGATTGATTACTCAGGAAATTGCTGAAACATTTTTTACTGTTCCAAAGGACTTTTGTTGCCCAATATCATTGGATTTAATGAGAGACCCGGTGATAATTTCCACAGGCCAAACTTATGACAGAGGTTCCATTTCCAGGTGGATGGAAGAAGGCCATACTACATGCCCGAAAACAGGCCAAATGCTCGCCCACAATCGCCTCGTTCCGAATCGTGCTCTGAGGAATTTGATTGTGCAGTGGTGCGCTGCACATGGAGTTCCCCTTGACCCGCCAGAGGTCATGGATGCAGTGGGTGAAGGTTTTGCATCAGCTTGTCCCAGCAAAGCCGCCCTTGAAGCCAACAGAGCCACTGCAACACTTCTCATTCAACAGCTAGCTAATGGATCACAAGCTGGAAAGACTGTGGCTGCACGGGAGATACGATTGCTTGCAAAAACTGGAAGGGAGAATCGTGCCTTCATTGCAGAAGCAGGGGCAATTCCTCATCTTCGGAATTTGCTTTCATCACCTAATGCTGTTGCTCAGGAGAACTCTGTGACTGCACTGCTCAATTTATCCATTTTTGACAAGAACAAAAGTCGGATCATGGACGAGGAAGGATGTCTAGGATCAATCGTGGACGTTTTGAGATTTGGACACACGACGGAGGCAAGGGAAAATGCTGCTGCAACATTGTTCAGCCTATCAGCCGTGCATGACTATAAGAAAATAATTGCAGATAAGACGGGAGCTGTTGTAGCCCTGGCGGGGCTGTTGAAAGAGGGAACTCCAAGAGGAAAGAAGGATGCTGTAACGGCTTTATTCAATCTTTCCACCCACACTGAGAATTGCGGTAGAATGATAGAGGCAGGGGCAGTAACAGCTCTAGTTGGTGCTTTGGGGAATGAAGGAGTTGCAGAAGAAGCGGCAGGTGCACTGGCCTTGGTCGTACGGCAGCCTATCGGGGCAAAAGCAGTGGTGAATGAGGAAGCAGCAGTAGCTGGATTAATGGCAATGATGCGTTGTGGAACGCCGAGAGGTAAAGAGAATGCGGTTGCAGCATTGCTTGAATTGTGCCGGAGTGGAGGCGCAGCTGCAACAGAAAGAGTGGTTAAGGCTCCAGCTTTGGCTGGATTACTTCAAACCCTGCTTTTCACAGGGACAAAGCGGGCAAGAAGAAAAGCAGCTTCACTTGCTAGAGTGTTTCAGAGGTGTGAGAATGCATCTCTACATTACGGTGGATTAGGTGTAGGCTATGCCTTTGCTAGCAATTCAACTACAACTAGGGATACCAGCTTTGCCGGTGATGTTTCAGTGCCAATGTCCATTTCTGTTTTATAG 2142 0.4683 MASGAIFSSLRRRRSPTLEAFLAPVDLSNVALVQTLVSVAGELVSCFSKSSFFFQRKNSRSLIRKVEVFQLLLEYLSDSGSYLPPTAVLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPIKDVELSKDVREQVELLQKHSRSAKLFIDMKDDALRVRFFSFLDEFENGRIPDSAEFQSFYVEELQILDATSCRSEIEALEEQIVNHEGDIEPTISVLNGLVAMTRYCRFLLFGFEEDELDLENGSQKKPKRRLITQEIAETFFTVPKDFCCPISLDLMRDPVIISTGQTYDRGSISRWMEEGHTTCPKTGQMLAHNRLVPNRALRNLIVQWCAAHGVPLDPPEVMDAVGEGFASACPSKAALEANRATATLLIQQLANGSQAGKTVAAREIRLLAKTGRENRAFIAEAGAIPHLRNLLSSPNAVAQENSVTALLNLSIFDKNKSRIMDEEGCLGSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKIIADKTGAVVALAGLLKEGTPRGKKDAVTALFNLSTHTENCGRMIEAGAVTALVGALGNEGVAEEAAGALALVVRQPIGAKAVVNEEAAVAGLMAMMRCGTPRGKENAVAALLELCRSGGAAATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASNSTTTRDTSFAGDVSVPMSISVL* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1564 713 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Apr1g1564 713 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Apr1g1564 713 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 12 695 - -
Apr1g1564 713 SUPERFAMILY RING/U-box 276 361 - -
Apr1g1564 713 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Apr1g1564 713 SMART arm_5 421 461 IPR000225 GO:0005515
Apr1g1564 713 SMART arm_5 586 627 IPR000225 GO:0005515
Apr1g1564 713 SMART arm_5 506 546 IPR000225 GO:0005515
Apr1g1564 713 SMART arm_5 547 585 IPR000225 GO:0005515
Apr1g1564 713 Gene3D - 550 671 IPR011989 -
Apr1g1564 713 Coils Coil 212 232 - -
Apr1g1564 713 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Apr1g1564 713 CDD RING-Ubox_PUB 292 334 IPR045210 -
Apr1g1564 713 PANTHER U BOX DOMAIN-CONTAINING 12 695 - -
Apr1g1564 713 Gene3D - 27 144 IPR036537 GO:0007166
Apr1g1564 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 361 IPR013083 -
Apr1g1564 713 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Apr1g1564 713 Gene3D - 376 549 IPR011989 -
Apr1g1564 713 SUPERFAMILY ARM repeat 393 669 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1564 Apr-Chr1 25175258 25178695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1564 1 712 U-box Gene Family AT1G29340 69.726 0.0 947
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1564 - - gmx:100811153 1209.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1564 1 25175258 25178695 Apr1g1564 1 25175258 25178695 ECH
Apr3g2232 3 38066266 38069678 Apr1g1564 1 25175258 25178695 PCT