Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1557 ATGACTAGGGCTGTCCGCAATAGGGTTCTCAAAGATGCCAATGGTGATATTAGTGATCATCTACGCAACCACATCCATTTGACAAATTGTATTCACCTGAAGAACCATATGCACAAGAACAGCCCCATACTGGCTGATAGGTCAATCATGAGGGACCTAGTTGTGCTGCAGAGATCAAGGTCTCTCAGGGACCCTTCTGCAAGTCCTCCATCATGGCACTCACCTTCTGTTGTTGACCTGCTTTTCAAGAAAGTTGAAAATGATGCTGTGTCTCAAGGGGGAAGAAGGTCTGTCGGGGTTGAGCACAGGAAGGAAGGGAGGAGAATGTCTGGAACCTCACCGCCATTGGTGAGTATTGGTTCATCAAGAGTTGCTCCGGGTGAGATTGGTAGGGGTAATGATGGGATAACGGCAACTAGTGAACGTAGTAGTAGAAGTGGAATGGGAGATGGGAGGAGAGTGGGTAGAGACGAATCTGGAAGGAAGGATGATAGGCCTGACTTTTTGGATGTGAATCAAGAAGGGCCTTTCAATCAAGCTGGCAAAAGTTTGGCCGAAGATGTTATTTCAAGGCACTCTGAGTCCAAAGAGAGAAAGGGCAAACAAAGGGGGAAGAATGTTCGAGACTCTCAAGTTAAGACCCTTTCTGAGCAGCTGAAAGAAGTTCCATTGGATAGTGATGATTTAGCATCATCGAACATTCATTTTCGTGGAAGATTTCCACGACATGAGAGACTTGTTGAGGAGGCAGAAGCCAGGATGCATGGTAATGGCAGTGGAATGAATAGGGGGAAAAGGCGTAAATTTCGAAGTGCTAGAAGGGCTCGGGTTGCTACAACATCAAGAGATATTGAAGCTGAGAATGAAATGTCCGTGGCTTCCAACTCATTAGCTCAGGCTTCAGCGCATCATAAATATCATTTGGAGGAGGCTGATGCTTTTGCAGATGAAAATGTTACTAGGGCTCCAAAAAATGGGTGTGGCATTCCTTGGAATTGGTCCAGAATTCATAATAGAGGTAAAACATTCCTTGACATGGCTGGCCGAAGTTTTTCTTGTGGTTTATCAGACTCGAGATTAAAGAAAGGAACGTTAGGTGCCAATGGAAGAAATATTTCTGATATGCCTGTGGCATCTGATCACTCAAGCTCATGTACTAAATCTGATGCAGAGGCACTGCCTTTACTGGTTGACTATTCTGGATCTCATGCAAGCACGGAGAATGCTTGTTGGGATCATGACTATTCTGGGGAACTAGGTCTTTTTGGTGATAATTTATTCAAGCATGATATTGATTCTGACCTTGCTTCTGAAGCTAGATCTGGTGACCAGCATAAGTTGAGAGGGAATCGTCACAATAGACACCAAAGCTTAACACAAAAATATATGCCTCGAACCTTCAGAGAAATGGTTGGGCAGAATTTAGTGGCACAAGCTCTTTCAAACGCAGTAATGAAAAGGAAAGTTGGATTATTGTACGTGTTTTATGGTCCTCATGGCACTGGAAAGACTTCTTGTGCTCGCATATTTGCCAGAGCTTTGAATTGTAATTCTTCAGAGCACCCAAAACCTTGTGGCTTTTGCAATTATTGCATAGCTCATGATATGGGCAAGAGTAGAAATATAAGGGAAGTTGGTCCAGTCAGTAATTTTGACTTTGAGAGCATCATGGACCTACTTGACAATATGATTGTTTCCCAGCTTCCATCACATTACAGAGTATTTATTTTTGATGACTGTGATACTCTGTCAGCTGATTGTTGGAATGCTATATCGAAGGTCATTGATCGAGCACCTAGACGTGTGGTTTTTATCCTTGTCAGTTCTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAGTTCTTTTTCCCAAAGCTGAAGGATGCTGATATTATATTTACGCTGCAGTGGATTGCAACCAAAGAAGGTCTAGAAATTGATAAGGATGCCCTGAAACTCATTGCATCAAGATCAGACGGATCACTGAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTGCTTGGGCAAAGAATATCTGTTCCTCTTGTTCAGGAACTGGTAGGACTTATCTCTGATGAGAAATTGGTGGATCTGCTTGATTTGGCATTATCTGCAGACACAGTTAACACTGTTAAGAATTTGAGAGTGATCATGGAAACTGGTGTTGAACCATTAGCTTTGATGTCACAACTTGCTACAGTAATTACTGATATACTTGCAGGGACCTATGATTTCACAAAAGAAAGGCGAAGAAGGAAGTTCTTCCGGAGACAGCCATTGTCCAAAGAAGACATGGAAAAGCTTCGCCAAGCTCTGAAAACTTTATCTGAGGCTGAGAAGCAGTTGAGGATGTCCAATGACAAGCTAACCTGGTTGACAGCTGCATTGCTTCAACTTGCTCCTGACCAGCAATATGTGTTGCCTACTTCATCTGATAATAGTTTCAACCATAGTCCCTTGGCTCTAAAAGATGCACATATAAGAGAAGCAGCTAGGCAAACTAGTAATCCTGTTGAAATTCATAACAAAACAAGACGATTATCAATGGATTCTAGAATTGAAAATTTCCAAGCTGGAAGCTCAGCAGAGGGTATGACAAAGGGTCCTGGTTCAGAGAAGAGACGAATAAGTGTGTCTGGTTCTGCTTCTCAACATACATATTCACATGCCACTGACAAGAGTAGGATGAATGAAAGGCAGATTTTGGGTAAAAGCCGTAAAGAAATTGATGAGATATGGTTAGAGGTGCTTGAGAGAATTCAAGTTACTGGTTTGAAAGAATTTTTGTATAAAGAAGGCAAGCTGATCTCTGTTAGTTTTGGAGCAGCTCCAACTGTGCAGTTAATGTTCAGTTCTCAACTGACCAAATCTACTGCTGAGAAGTTCAGAGGTCACATCTTACAAGCATTTGAATCTGTCCTTGGATCTTCTATAACAATAAAAATTAGATGTGAGTCATATAAAGATGCAGGCCCTGCTGTTCAACTGCCTCTTATATTGTCTGCTAGCAATGATAGTTCATCTCAGATTCGAGACTCAAATGGTGTTGGCAATCAAGCTCATGCTTCCCTAACTGATTCTGTTGAAAAGAAAATGGGTGAAATTGTAGAAGCAGCAGCTTCTCAAGTGGAGCACAAGAATAATGAGCAGCGGGTTGATGCTCATGGGACATCTTATAAAAGTTTAGAAGGTACAAGTATAGGACAAACATCAGCTTCCCAGAAAAAACCAATTGTTAAGTCACATTTAGACCGAAGAAAGCTTAGGGAGCAAGGTCAAAGTCGAAGTCTTGTAAAAAGCAAAGTATCTCTTGCTCATGTAATCCAGCAGGCAGAAGGTCCGAGAAGTGGGTGGTCAAAACGTAAAGCAGTTTCTATTGCTGAAAAGCTTGAACAAGAGAACCTGAGGCTGGAGCCAAGATCAAGAAGTTTATTATGTTGGAAAGCAACAAAAGTAACCCGGCGAAAGCTGTCACGCTTGAAAATCCGAACCCGAAAACCACGTGCACTGCTGAATCTGGTCTCATGTGGGAAGTGTCTCTCTACAAAATCTCCAAGGTAG 3576 0.4214 MTRAVRNRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSRSLRDPSASPPSWHSPSVVDLLFKKVENDAVSQGGRRSVGVEHRKEGRRMSGTSPPLVSIGSSRVAPGEIGRGNDGITATSERSSRSGMGDGRRVGRDESGRKDDRPDFLDVNQEGPFNQAGKSLAEDVISRHSESKERKGKQRGKNVRDSQVKTLSEQLKEVPLDSDDLASSNIHFRGRFPRHERLVEEAEARMHGNGSGMNRGKRRKFRSARRARVATTSRDIEAENEMSVASNSLAQASAHHKYHLEEADAFADENVTRAPKNGCGIPWNWSRIHNRGKTFLDMAGRSFSCGLSDSRLKKGTLGANGRNISDMPVASDHSSSCTKSDAEALPLLVDYSGSHASTENACWDHDYSGELGLFGDNLFKHDIDSDLASEARSGDQHKLRGNRHNRHQSLTQKYMPRTFREMVGQNLVAQALSNAVMKRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCNYCIAHDMGKSRNIREVGPVSNFDFESIMDLLDNMIVSQLPSHYRVFIFDDCDTLSADCWNAISKVIDRAPRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIIFTLQWIATKEGLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTKERRRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSSDNSFNHSPLALKDAHIREAARQTSNPVEIHNKTRRLSMDSRIENFQAGSSAEGMTKGPGSEKRRISVSGSASQHTYSHATDKSRMNERQILGKSRKEIDEIWLEVLERIQVTGLKEFLYKEGKLISVSFGAAPTVQLMFSSQLTKSTAEKFRGHILQAFESVLGSSITIKIRCESYKDAGPAVQLPLILSASNDSSSQIRDSNGVGNQAHASLTDSVEKKMGEIVEAAASQVEHKNNEQRVDAHGTSYKSLEGTSIGQTSASQKKPIVKSHLDRRKLREQGQSRSLVKSKVSLAHVIQQAEGPRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKATKVTRRKLSRLKIRTRKPRALLNLVSCGKCLSTKSPR* 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1557 1191 Pfam DNA polymerase III, delta subunit 473 630 - -
Apr1g1557 1191 Gene3D - 632 693 - -
Apr1g1557 1191 MobiDBLite consensus disorder prediction 881 895 - -
Apr1g1557 1191 CDD HLD_clamp_pol_III_gamma_tau 630 693 IPR045085 -
Apr1g1557 1191 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 180 1158 - -
Apr1g1557 1191 PANTHER PROTEIN STICHEL-LIKE 3 180 1158 - -
Apr1g1557 1191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 677 IPR027417 -
Apr1g1557 1191 MobiDBLite consensus disorder prediction 260 275 - -
Apr1g1557 1191 MobiDBLite consensus disorder prediction 861 903 - -
Apr1g1557 1191 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 456 804 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Apr1g1557 1191 MobiDBLite consensus disorder prediction 91 213 - -
Apr1g1557 1191 MobiDBLite consensus disorder prediction 1066 1082 - -
Apr1g1557 1191 Pfam DNA polymerase III subunits gamma and tau domain III 686 804 IPR022754 GO:0003887
Apr1g1557 1191 Gene3D - 448 627 IPR027417 -
Apr1g1557 1191 MobiDBLite consensus disorder prediction 1066 1086 - -
Apr1g1557 1191 CDD AAA 471 630 - -
Apr1g1557 1191 SUPERFAMILY post-AAA+ oligomerization domain-like 701 804 IPR008921 GO:0003677|GO:0006260
Apr1g1557 1191 MobiDBLite consensus disorder prediction 255 281 - -
Apr1g1557 1191 Coils Coil 766 793 - -
Apr1g1557 1191 MobiDBLite consensus disorder prediction 187 210 - -
Apr1g1557 1191 SMART AAA_5 489 630 IPR003593 -
Apr1g1557 1191 MobiDBLite consensus disorder prediction 146 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1557 Apr-Chr1 25109833 25117563 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1557 456 754 Core DNA Replication Machinery Family AT1G21690 23.588 1.23e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1557 - - gmx:100809005 2054.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1557 1 25109833 25117563 Apr1g1557 1 25109833 25117563 ECH