Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1553 ATGGGAGCAGTGAGTGATGGAATTCGCAGCAGAAAGAAGTCATCATCAAGAGGGCACCACAGGTTTGTAGGGGTTCGTCAAAGGCCATCAGGGAGATGGGTTGCAGAGATCAAAGACTCGTTACAAAAGGTTAGGCTTTGGCTAGGAACCTTTGACACTGCTGAGGATGCAGCTCGTGCATATGACAATGCTGCTAGAGCTTTGAGAGGTGCTAATGCTAGAACCAACTTTGAGTTACCTGAGTCTGGAACCTCTGGTGTTGGTGTTGCTACTAAGCGTGGTGGTGTTGGTGGTTCCAACTTCATGCTTGATAACACTGAACCCTTTTCTTTTGAGGATGTTAATGAGTCAGGTGCAGATGCTGAAGGCCTTCTTGGTGCACTTAAGGCCAAACTTTTTGATGGAAAAGAAGGGAAGTTTCACTTTCCATCATATCTTGCTAATTGTGCTGCGCCGGTTGTTCCATCTGGTGTGGTTTCAAGAACAACTCAGAACTGTTCTGGGAAGAAAGAGTTATCATCATCATCATCATCAGTAGCTAATGTTTCTCTCACTGGGGTGAATGGAGCAGCAAACAACACTCTGGCTGGTTTGATGGGTACTTTAACTTCATCAAACACTTGTGCTAAAAGTGTGCTTGTCCCTAATCATGATCATGAAGGTGCGGGAGTCAACTCTCATCAACTTTGTCAAACCCCTACTTTGACAAGCATGACATGGTCCAATGAAATGGCATATGAATTGTCTTGGCCTACCCAGATGAGCCAAGTTACTGATAATAGTCTGCTTGCATCAGCCAGTGCAGCCACCTTGACATGGCCACTTTCTGGGGTAATTGACTCCTCTGTTGACGATATCACATGCACTGATATAGGGGCACCAAATAGCAACAAAAGTGGCCAAATGAATATGGTAAGCATGCAGATGCAGGTACCTCTTGTTGGTGGAGCAAATGAAGGCCTTTGGACATTGGAGCAGCATCAATTTGTGCAATGTGAGAACAGTTGGTTTAGTTCTAATGGCTCTTGGGATCCTCTCCTCTTTGTGCCCTCTGAGCTAGCTTGA 1065 0.4545 MGAVSDGIRSRKKSSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDNAARALRGANARTNFELPESGTSGVGVATKRGGVGGSNFMLDNTEPFSFEDVNESGADAEGLLGALKAKLFDGKEGKFHFPSYLANCAAPVVPSGVVSRTTQNCSGKKELSSSSSSVANVSLTGVNGAANNTLAGLMGTLTSSNTCAKSVLVPNHDHEGAGVNSHQLCQTPTLTSMTWSNEMAYELSWPTQMSQVTDNSLLASASAATLTWPLSGVIDSSVDDITCTDIGAPNSNKSGQMNMVSMQMQVPLVGGANEGLWTLEQHQFVQCENSWFSSNGSWDPLLFVPSELA* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1553 354 MobiDBLite consensus disorder prediction 1 24 - -
Apr1g1553 354 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Apr1g1553 354 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Apr1g1553 354 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Apr1g1553 354 CDD AP2 21 78 IPR001471 GO:0003700|GO:0006355
Apr1g1553 354 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Apr1g1553 354 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 2 349 - -
Apr1g1553 354 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Apr1g1553 354 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Apr1g1553 354 SUPERFAMILY DNA-binding domain 22 78 IPR016177 GO:0003677
Apr1g1553 354 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 2 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1553 Apr-Chr1 25038100 25039164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1553 9 77 AP2-EREBP Transcription Factor Family AT5G19790 67.143 7.42e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr1g1553 AP2 3.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1553 - - gmx:102661478 438.343