Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1546 ATGGATCAAGACAAAAACATATGCGGAGGTGAGGTATTGGATCAGGTTCATGAAGGGGTGGATGGGAATTTGACTCATTTGGTTGAAGTGGTTGCAATTGATGCTGTAGATGGGAGCAGCTTGGGTGGCAGAATTAGTATGAGTGGAGAAGCTGGAAGTTCAGGAAAGGTGGGTAAGGAAATGGTATCCAATAAGGAGATTAAGGAGGGGCTTGAGGAAGTTAAGGGTCAGGACAAGCATGATGAAGAAAATATCAGTGATAAATTGCCTGGGGTTGATCAGGGAACTAATTATGATTCAAATCATTTGGTTAATCAGGAAGTGGTTGAAACTGTGGTTGTGATAGAGTCTGTTCAAACTGAATATGTCAACGAAGATAATAGGAAATTGGGAGCAAAAGTTAACGAATCAGGGTTGAGCTTGGTATCCATGAAAGCAACAAAAGAGGTGTCTGAAACTGATAAAAATTCGTGTGTGATTGATATAAAGTGCAGCAGCCACAAGGGGTATTATGAAAATTCTGAAGGTGAAAGGATTTGTAGGATTTGCCATCTGGCTTCTGGGCAACCTTCGGATGCAACAACTGTTGGCCCTGTTAATAGTGCTACGAGTGCAGATTTGATTCAGCTTGGTTGTGCGTGTAAAGATGAGCTAGGCATTGCACACGTTCATTGTGCAGAGGCATGGTTCAAGCTTAAGGGAAACAGGTTATGTGAAATATGTGGTGAGACTGCAAAAAATGTTTCGGGTGTTGCTAGTATTGGATTTATGGAAGAGTGGAATGAAAGAAGATTCATGAACAGCGATGGTAACTCATCCCGTAGGTTTGGCGGATGCTGGCGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTAATAGCATTTGTTCTGCCATGGTTTTTTCGTGTAAATATGTTCTAG 927 0.4207 MDQDKNICGGEVLDQVHEGVDGNLTHLVEVVAIDAVDGSSLGGRISMSGEAGSSGKVGKEMVSNKEIKEGLEEVKGQDKHDEENISDKLPGVDQGTNYDSNHLVNQEVVETVVVIESVQTEYVNEDNRKLGAKVNESGLSLVSMKATKEVSETDKNSCVIDIKCSSHKGYYENSEGERICRICHLASGQPSDATTVGPVNSATSADLIQLGCACKDELGIAHVHCAEAWFKLKGNRLCEICGETAKNVSGVASIGFMEEWNERRFMNSDGNSSRRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1546 308 PANTHER ZINC FINGER, RING-CH-TYPE 1 308 - -
Apr1g1546 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 253 IPR013083 -
Apr1g1546 308 Pfam RING-variant domain 180 241 IPR011016 GO:0008270
Apr1g1546 308 MobiDBLite consensus disorder prediction 71 101 - -
Apr1g1546 308 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 308 - -
Apr1g1546 308 SUPERFAMILY RING/U-box 174 244 - -
Apr1g1546 308 SMART ringv_2 179 242 IPR011016 GO:0008270
Apr1g1546 308 MobiDBLite consensus disorder prediction 71 88 - -
Apr1g1546 308 ProSiteProfiles Zinc finger RING-CH-type profile. 172 248 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1546 Apr-Chr1 24964381 24968535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1546 160 307 C3H Transcription Factor Family AT5G05830 39.744 5.35e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1546 - - gmx:100791720 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1546 1 24964381 24968535 Apr1g1546 1 24964381 24968535 ECH
Apr3g2213 3 37917718 37920917 Apr1g1546 1 24964381 24968535 PCT