Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1545 ATGGGAGGTGTCAGAGTGGTTGCTTGGCTCATTTCCTTCTTTGTGTGGAATTGGGTGGCAATGGTTGTTGAGGGCACTGATAGCCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTGGCTGCTTTGATGTCCCTGAAGAGTAAGATGAATGATGAGTTGCATGTGATGGATGGTTGGGATATTAATTCGGTTGACCCTTGTACTTGGAACATGGTTGGTTGCTCTGCCGAGGGTTATGTCATTTCCCTGGAAATGGCCAGTGCAGGTTTATCTGGAATGATTTCCTCAGGAATTGGAAATTTGAGCCGCCTCCAAACATTGTTATTGCAGAACAATCAGTTATCTGGTCCTATTCCGACAGAGATAGGAAAGCTGTTAGAGCTTCAGACCCTTGACCTTTCTGGTAACCAGCTTGTTGGGGAAATTCCTAATTCTTTGGGCTTTTTGACTCAACTTAGTTACTTGCGGCTCAGCAAAAATAAACTATCTGGACAGATCCCTCAACTTGTTGCTAATCTCACAGGCCTTTCATTCTTGGACTTGTCGTTCAATAATCTCAGTGGTCCCACTCCAAAAATTTTAGCAAAAGGTTATAGTGTTTCAGGAAACAACTTCCTCTGCACGTCTTCCTCACAGAATTGTATGGGCTTTTCAAAACCAGTAAATGATACAGGGTCATCTCGGAAAGTCAGTAGTCATCACCAAAGGGTTCTTGCTGTTGTTATTGGCTTTAGTTGCACATTTTTTATTTCGGTGGTGCTTCTTGTCTTTTGGTTTCATTGGTACAAATCACGTATCCTCTATACATCTTATGTGGAGCAAGATTGTGACTTTGATATTGGTCATTTGAAGAGGTTCTCCTTCCGCGAATTGCAAATTGCTACTGGAAATTTCAGTCCAAAAAATATCCTAGGACAAGGTGGTTTTGGTGTTGTCTATAAAGGATGCCTTGCAAACAAAATGTTGGTGGCAGTAAAGAGGCTGAAAGATCCTAATTACACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAGATGATTGGCTTGGCTGTGCATCGGAATCTCTTGCGTCTTTATGGATTTTGTATGACACCAGATGAAAGGTTACTTGTTTATCCTTACATGCCCAATGGCAGTGTTGCTGATCGCTTGAGAGAGACTCGCCGTGAAAAGCCATCATTGGACTGGAACAGGCGAATGCGTGTTGCCCTTGGGGCAGCACGCGGCCTTCTGTATTTGCACGAACAATGCAATCCAAAAATAATCCATAGAGATGTTAAGGCAGCAAACATCTTGTTAGATGAAAGTTTCGAAGCGGTGGTGGGGGATTTTGGTCTAGCTAAGCTCTTAGATCAAAGGGATTCACATGTAACTACTGCAGTGAGGGGTACTGTAGGGCACATTGCCCCCGAGTATCTATCAACTGGACAGTCTTCTGAGAAAACAGATGTTTTTGGATTTGGCATATTACTTTTGGAGCTCATAACAGGACAAAAGGCACTGGATGCTGGCAATGGTCAGGTCCAAAAGGGAATGATTCTTGACTGGGTTAAAACCTTATTTGAGGAGAAGCGGTTGGAAGTGTTAGTTGATAGGGATCTGAGGGGATGTTTTGATCCAATAGAGTTAGAAAAAGCAGTGGAGTTGTCTTTACAGTGTACTCAGTCGCTTCCTACTTTGCGGCCAAAGATGTCAGAAGTTTTAAAGATTCTAGAAGGCCTGATTGGGCAGTCAGTGCGGCCAGAAGAGTCACAAGGTGGAGGGCCTAACCTATATGATGAAAGGGCTTGCAGTTTTTCACAAAATTATAGTGATGTTCATGAAGAACCTTCCTTTATTATCGAAGCCATTGAGCTTTCTGGACCTAGGTGA 1869 0.4312 MGGVRVVAWLISFFVWNWVAMVVEGTDSLLSPKGVNYEVAALMSLKSKMNDELHVMDGWDINSVDPCTWNMVGCSAEGYVISLEMASAGLSGMISSGIGNLSRLQTLLLQNNQLSGPIPTEIGKLLELQTLDLSGNQLVGEIPNSLGFLTQLSYLRLSKNKLSGQIPQLVANLTGLSFLDLSFNNLSGPTPKILAKGYSVSGNNFLCTSSSQNCMGFSKPVNDTGSSRKVSSHHQRVLAVVIGFSCTFFISVVLLVFWFHWYKSRILYTSYVEQDCDFDIGHLKRFSFRELQIATGNFSPKNILGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRETRREKPSLDWNRRMRVALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDAGNGQVQKGMILDWVKTLFEEKRLEVLVDRDLRGCFDPIELEKAVELSLQCTQSLPTLRPKMSEVLKILEGLIGQSVRPEESQGGGPNLYDERACSFSQNYSDVHEEPSFIIEAIELSGPR* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1545 622 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 622 - -
Apr1g1545 622 SUPERFAMILY L domain-like 37 205 - -
Apr1g1545 622 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 622 - -
Apr1g1545 622 SMART serkin_6 298 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1545 622 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Apr1g1545 622 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Apr1g1545 622 SUPERFAMILY Protein kinase-like (PK-like) 281 571 IPR011009 -
Apr1g1545 622 Gene3D Ribonuclease Inhibitor 35 216 IPR032675 -
Apr1g1545 622 Gene3D Phosphorylase Kinase; domain 1 268 373 - -
Apr1g1545 622 ProSiteProfiles Leucine-rich repeat profile. 127 150 IPR001611 GO:0005515
Apr1g1545 622 Pfam Protein kinase domain 301 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1545 622 Gene3D Transferase(Phosphotransferase) domain 1 374 578 - -
Apr1g1545 622 ProSiteProfiles Protein kinase domain profile. 298 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1545 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1545 Apr-Chr1 24954986 24959666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1545 43 622 Receptor kinase-like Gene Family AT5G45780 71.993 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Apr1g1545 Pkinase 8.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1545 - - gmx:100810610 1146.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1545 1 24954986 24959666 Apr1g1545 1 24954986 24959666 ECH