Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1544 ATGGCTGAGGATAAGGAGATGTCTACTTCTGTCATCAATGGCAATGATTCCCTCACTGGTCACATCATATCTACAACAATTGGAGGCAAAAATGGGGAGCCCAAACAGACTATCAGTTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCCATTAAAAAGGTTTTACAAGACAGAAGATATAAGAATCGTGAACTGCAGTTAATGCGTGTGATGGATCATCCAAATGTGATCTCTCTGAAGCATTGTTTCCTTTCCACTACTAGTACAGATGAACTTTTTCTTAATTTGGTGATGGAATATGTTCCAGAGTCTATGTATAGAGTCTTAAAGCACTATAGCAATGCTAATCAAAGAATGCCAATCATCTATGTAAAACTTTATATGTACCAGATTTTCAGGGGCTTGGCTTACATCCACACTGTTCCCAAAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTGGATCCTCTTACCCACCAAGTGAAGCTCTGCGATTTTGGAAGTGCGAAAGTTCTAGTCAAAGGTGAAGCTAATATATCATACATATGTTCACGATTCTATCGAGCGCCAGAACTTATATTTGGTGCCACAGAGTATACAACTTCAATTGATATTTGGTCAGCCGGTTGTGTCCTTGCCGAACTTCTTTTGGGCCAGCCATTATTCCCTGGTGAAAATGCAGTAGACCAGCTTGTACATATTATAAAGGTGCTTGGCACACCCACTCGAGAGGAAGTACGTTGTATGAATCCCAATTATAATGACTTCAGGTTTCCACAAATAAAAGCGCACCCATGGCACAAGATATTCCACAAAAAGATGCCTCCAGAGGCTATTGATCTTGCATCTCGGCTCTTGCAATACTCCCCAAGTCTCCGGTGCTCTGCGCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTCCGAGAACCCAATGCTCGCCTGCCAAATGGTCGTCCATTTCCCCTTCTATTTAACTTCAAACAGGAATTATCCGGAGCATCTCCAGAGCTTGTTACTAAGTTGATACCTGACCACATGAAGCGGCAAATAGGGTCACAATTTGTTCATCTGGCAGGATCATAA 1143 0.4234 MAEDKEMSTSVINGNDSLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFLSTTSTDELFLNLVMEYVPESMYRVLKHYSNANQRMPIIYVKLYMYQIFRGLAYIHTVPKVCHRDLKPQNILVDPLTHQVKLCDFGSAKVLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCSALEACAHPFFDELREPNARLPNGRPFPLLFNFKQELSGASPELVTKLIPDHMKRQIGSQFVHLAGS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1544 380 PANTHER BNAANNG31110D PROTEIN 1 374 - -
Apr1g1544 380 Gene3D Phosphorylase Kinase; domain 1 25 119 - -
Apr1g1544 380 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 374 - -
Apr1g1544 380 ProSiteProfiles Protein kinase domain profile. 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1544 380 CDD STKc_GSK3 35 327 IPR039192 -
Apr1g1544 380 SUPERFAMILY Protein kinase-like (PK-like) 39 350 IPR011009 -
Apr1g1544 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Apr1g1544 380 Gene3D Transferase(Phosphotransferase) domain 1 120 367 - -
Apr1g1544 380 Pfam Protein kinase domain 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1544 380 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Apr1g1544 380 SMART serkin_6 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1544 Apr-Chr1 24945478 24953477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1544 44 362 MAP Kinase Gene Family AT3G59790 35.928 4.89e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Apr1g1544 Pkinase 7.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1544 K14502 - gmx:100779909 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1544 1 24945478 24953477 Apr1g1544 1 24945478 24953477 ECH
Apr1g1544 1 24945478 24953477 Apr3g0966 3 24560297 24576650 ECH
Apr1g1544 1 24945478 24953477 Apr3g2212 3 37909461 37914152 PCT