Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1540 ATGAGGCCCTTTTGCAGGTTCTCGATTCTCCTTGCGCTGGTTGCTCTCGTGGAATCTTCATGCAACAGTGAAGACCAAAACCTGGTGTCAAAGGCCTTCCAATCTGTCTCAGGATTCAACGCTTCCTGGTTCCATAAAACAGGTTCCAACTGTTTAGATATTCAGATTAAGGAGATAGAGCTTCCTTCCAAAAACTTGAGTGGAAGTATCTCGTGGAGATATCTGAGGAACATGTCAAAGTTGCAGGTTCTGGATCTGTCTGGGAATTCTCTACAAGGCCAGGTCCCAAACTGGTTCTGGGCAAGCTCAACCTTATTGGTAGTGAATCTTTCCAAGAACAAATTCGGAGGGAGCATTGCGTTGAAACCCACTTCCCAAAATGCTTCCTTTTCATCACTTCAAACACTCAATCTCTCATACAACAGGTTCACCAATCTACTACACCTCTCTGGTTTCTCAAACCTTAAAAGCCTCGACCTTTCCCATAACAACCTCGGCACGTTACCTTCGGGGTTCCAAAACCTCACCAATCTACGCCACCTCGATCTCTCAAGCTGCAACATCAAAGGAAACGTAAAACCCATTTCTTTCCTTCCCTCACTCGCCCACTTAGACTTGTCTAACAACACATTGAACGGTAGTTTCCCCTCTGACTTTCCTCCCCTGAACGCCATCAAATTCTTGAACATATCTCACAACAACTTCAAAGCATCGGTTACCTTAGATAAGTTCAAAAAATTCGGCAAATCCGCGTTCATCCACGCCGGCAACAACTTCAACTACAACTACAACGCATCCAAAACGCCAAAACTTGGTTCAAGCGAAAACCCAAAACCCATTCACGCGAAGCAGAGAGGGAAACAAAAGCCAAAGCAAAAGTCAAAACGCAAAACGAAAAGCATGATTGCGGGAGTGTCCTCTGGCTCAGCAGTTCTGGTAGTGGTTTTGTGTATGTGTGGTGTGTGGGGTTACAGAAGGAAGAGGGAAATGGCGAAGAAGAACAAATGGGCAATATCGAAACCGGTCCCAATGAGCATTAAGATGGAGAAATCAGGACCGTTCGCGTTTGAGACAGAGTCAGGGACATCGTGGGTGGCTGACCTGAAAGAACCCTCTTCTGCACCTGTGGTGATGTTCGAGAAGCCATTGATGAACCTGACCTTCGTAGACCTCATCGCTGCCACGTCACACTTCGGCAAGGACTCTCTCCTCGCTGAGGGGAGGTGTGGCCCTGTTTACCGTGCTGTCTTGCCCGGAGACATCGACGTGGCAATCAAGGTCCTCGAAAACGCCAGAGACGTTGTTCATCATCAAGCTGTCTCTACCTTCGTTGACCTCTCAAAACTCAAACACCCCAATCTCTTGCCCCTCTCGGGTTACTGCATTGCAGGGAAAGAGAAGCTGGTATTGTACGAGTTTATGTCAAACGGAGATTTGAGTAGGTGGCTGCACGAGCTACCATCGGGTGAGACTAACGTGGAGGATTGGAGTGGGGACACGTGGGAGATTCAAAACGGCGCCGTTTCTCGAGCCTCGCCCCCGGAAAAGATGGGGTGGCCAATACGGCACCGTATTGCCGTGGGGGTGGCGCGCGGGCTAGCTTTTCTCCACCACGCGGGGTCGAGGCCCGTCGTGCACGGCCATCTGGTGACGTCGAACGTCCTTCTCGCCGACGATTTCGAGCCCCGAATTGCCGATTTCGGGTTCCGGAAAATCGGGCAAGAAACTGCTCCCAATTGCACCACCGAGACCGACGTGTACTGCTTCGGAGTGGTGCTGATGGAGCTGCTGACGGGGAAGCCCGGCACAGCGGAGACGGTGGTTTGGGTGAGGAAACTGGTGAGAGAGGGTCACGGGGTGAGGGCGCTGGACGAGAGGCTCGAACTCGGTGGCGGCGACTCGGAGAGTGAGATGGTGGAGAGTCTCCGGGTTGCGTATTTGTGTACGGCGGAATCGCCAGCGAAGAGGCCCACCATGCAGCAGGTGTTGGGCCTTCTCAAAGATATTCATCCTAGCCCGGGACTGGACTGA 2031 0.514 MRPFCRFSILLALVALVESSCNSEDQNLVSKAFQSVSGFNASWFHKTGSNCLDIQIKEIELPSKNLSGSISWRYLRNMSKLQVLDLSGNSLQGQVPNWFWASSTLLVVNLSKNKFGGSIALKPTSQNASFSSLQTLNLSYNRFTNLLHLSGFSNLKSLDLSHNNLGTLPSGFQNLTNLRHLDLSSCNIKGNVKPISFLPSLAHLDLSNNTLNGSFPSDFPPLNAIKFLNISHNNFKASVTLDKFKKFGKSAFIHAGNNFNYNYNASKTPKLGSSENPKPIHAKQRGKQKPKQKSKRKTKSMIAGVSSGSAVLVVVLCMCGVWGYRRKREMAKKNKWAISKPVPMSIKMEKSGPFAFETESGTSWVADLKEPSSAPVVMFEKPLMNLTFVDLIAATSHFGKDSLLAEGRCGPVYRAVLPGDIDVAIKVLENARDVVHHQAVSTFVDLSKLKHPNLLPLSGYCIAGKEKLVLYEFMSNGDLSRWLHELPSGETNVEDWSGDTWEIQNGAVSRASPPEKMGWPIRHRIAVGVARGLAFLHHAGSRPVVHGHLVTSNVLLADDFEPRIADFGFRKIGQETAPNCTTETDVYCFGVVLMELLTGKPGTAETVVWVRKLVREGHGVRALDERLELGGGDSESEMVESLRVAYLCTAESPAKRPTMQQVLGLLKDIHPSPGLD* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1540 676 Gene3D Transferase(Phosphotransferase) domain 1 577 671 - -
Apr1g1540 676 ProSiteProfiles Protein kinase domain profile. 398 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1540 676 SMART LRR_typ_2 130 151 IPR003591 -
Apr1g1540 676 SMART LRR_typ_2 78 101 IPR003591 -
Apr1g1540 676 SMART LRR_typ_2 152 174 IPR003591 -
Apr1g1540 676 SMART LRR_typ_2 198 221 IPR003591 -
Apr1g1540 676 PANTHER KINASE, PUTATIVE-RELATED 3 676 - -
Apr1g1540 676 Pfam Leucine rich repeat 132 188 IPR001611 GO:0005515
Apr1g1540 676 Pfam Leucine rich repeat 197 235 IPR001611 GO:0005515
Apr1g1540 676 Gene3D Ribonuclease Inhibitor 125 256 IPR032675 -
Apr1g1540 676 Gene3D Ribonuclease Inhibitor 15 124 IPR032675 -
Apr1g1540 676 ProSiteProfiles Leucine-rich repeat profile. 177 199 IPR001611 GO:0005515
Apr1g1540 676 SUPERFAMILY Protein kinase-like (PK-like) 375 667 IPR011009 -
Apr1g1540 676 Pfam Leucine Rich Repeat 80 99 IPR001611 GO:0005515
Apr1g1540 676 ProSiteProfiles Leucine-rich repeat profile. 132 153 IPR001611 GO:0005515
Apr1g1540 676 MobiDBLite consensus disorder prediction 283 298 - -
Apr1g1540 676 Gene3D Transferase(Phosphotransferase) domain 1 474 576 - -
Apr1g1540 676 PRINTS Leucine-rich repeat signature 155 168 - -
Apr1g1540 676 PRINTS Leucine-rich repeat signature 198 211 - -
Apr1g1540 676 SUPERFAMILY L domain-like 51 238 - -
Apr1g1540 676 ProSiteProfiles Leucine-rich repeat profile. 154 176 IPR001611 GO:0005515
Apr1g1540 676 Gene3D Phosphorylase Kinase; domain 1 358 473 - -
Apr1g1540 676 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 676 - -
Apr1g1540 676 Pfam Protein tyrosine and serine/threonine kinase 402 571 IPR001245 GO:0004672|GO:0006468
Apr1g1540 676 MobiDBLite consensus disorder prediction 270 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1540 Apr-Chr1 24912661 24915573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1540 58 669 Receptor kinase-like Gene Family AT5G07280 32.116 2.22e-75 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Apr1g1540 PK_Tyr_Ser-Thr 3.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1540 - - gmx:100778920 1082.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1540 1 24912661 24915573 Apr1g1540 1 24912661 24915573 ECH
Apr3g2209 3 37884313 37888142 Apr1g1540 1 24912661 24915573 PCT